miRNA display CGI


Results 21 - 40 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 3' -58.4 NC_003085.1 + 10298 0.75 0.155085
Target:  5'- gCACAUCCGuccAGACGACGCcGUaGCCCUu -3'
miRNA:   3'- -GUGUAGGCuc-UCUGCUGCG-CG-CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 10617 0.72 0.241817
Target:  5'- gCGCG-CCGucgcaguGGGACGACGCggcaguGCGCCCUg -3'
miRNA:   3'- -GUGUaGGCu------CUCUGCUGCG------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 11357 0.67 0.504709
Target:  5'- gCACcUCCGAGAcgaugguGGCGGCGCcggacaccuGCGCUgCCg -3'
miRNA:   3'- -GUGuAGGCUCU-------CUGCUGCG---------CGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 11444 0.66 0.567051
Target:  5'- aGCGgucgCCGuuGGGGcCGACGCggugugaGCGUCCCa -3'
miRNA:   3'- gUGUa---GGC--UCUCuGCUGCG-------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 11762 0.69 0.357038
Target:  5'- aCGCGUCuaCGAcGGuacGGCGGCGcCGCGCUCCg -3'
miRNA:   3'- -GUGUAG--GCU-CU---CUGCUGC-GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 12599 0.71 0.2741
Target:  5'- --gGUCCGAcuGACGcGCGUgGCGCCCCg -3'
miRNA:   3'- gugUAGGCUcuCUGC-UGCG-CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 12687 0.66 0.536603
Target:  5'- uGCcUCCGGGuGGAUGACGCcaCGCCgCu -3'
miRNA:   3'- gUGuAGGCUC-UCUGCUGCGc-GCGGgG- -5'
11430 3' -58.4 NC_003085.1 + 13419 0.66 0.556495
Target:  5'- -cCAUCCGGaAGACGggggcauACgGCGUGCCCa -3'
miRNA:   3'- guGUAGGCUcUCUGC-------UG-CGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 14199 0.69 0.386003
Target:  5'- aGCGUCCGGGcuGCGAcaagccCGCGCGCaagcggaagcaggggCCCg -3'
miRNA:   3'- gUGUAGGCUCucUGCU------GCGCGCG---------------GGG- -5'
11430 3' -58.4 NC_003085.1 + 15002 0.66 0.556495
Target:  5'- aGCGUCCcAGAGAcgcucaugcuggcCGACGuCGCcgGCUCCg -3'
miRNA:   3'- gUGUAGGcUCUCU-------------GCUGC-GCG--CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 16394 0.67 0.4956
Target:  5'- gCACGUCCu---GGCGAUGCagcaagguaGCGUCCCa -3'
miRNA:   3'- -GUGUAGGcucuCUGCUGCG---------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 16453 0.71 0.295078
Target:  5'- -uCAUUCGAGGcGACGGCaguguccgaccuGCGCGCCgCCu -3'
miRNA:   3'- guGUAGGCUCU-CUGCUG------------CGCGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 17221 0.66 0.536603
Target:  5'- gCGCcgCUGGuGAGcACG-CG-GCGCCCCg -3'
miRNA:   3'- -GUGuaGGCU-CUC-UGCuGCgCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 17675 0.66 0.526232
Target:  5'- gGCG-CUGAGAccGACGACGCG-GCCa- -3'
miRNA:   3'- gUGUaGGCUCU--CUGCUGCGCgCGGgg -5'
11430 3' -58.4 NC_003085.1 + 17749 0.69 0.362037
Target:  5'- cCGCcUUCGGGAGAUGGCGCGagagauugcugagGCCCg -3'
miRNA:   3'- -GUGuAGGCUCUCUGCUGCGCg------------CGGGg -5'
11430 3' -58.4 NC_003085.1 + 18033 0.72 0.254334
Target:  5'- -cCAUCCGuGuAGACGACGCGCaUCCa -3'
miRNA:   3'- guGUAGGCuC-UCUGCUGCGCGcGGGg -5'
11430 3' -58.4 NC_003085.1 + 19074 0.67 0.475635
Target:  5'- aGCAggcgCCGGGcccGGACGGaGUGCGCCgCa -3'
miRNA:   3'- gUGUa---GGCUC---UCUGCUgCGCGCGGgG- -5'
11430 3' -58.4 NC_003085.1 + 19197 0.7 0.324962
Target:  5'- uCACGUCCGccuGGGGCGGCGggggcuggGCGCCgCg -3'
miRNA:   3'- -GUGUAGGCu--CUCUGCUGCg-------CGCGGgG- -5'
11430 3' -58.4 NC_003085.1 + 19354 0.69 0.382516
Target:  5'- gGCGUCCGuguagaGGAGGCGGcCG-GCGUCCUu -3'
miRNA:   3'- gUGUAGGC------UCUCUGCU-GCgCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 19521 0.67 0.456077
Target:  5'- aGCuuUUCGAGcAGcccaGCgGACGCGCGCCCg -3'
miRNA:   3'- gUGu-AGGCUC-UC----UG-CUGCGCGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.