miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 3' -58.4 NC_003085.1 + 188 0.7 0.348815
Target:  5'- aGCAUCUcGGAGugGACGCgGCGCg-- -3'
miRNA:   3'- gUGUAGGcUCUCugCUGCG-CGCGggg -5'
11430 3' -58.4 NC_003085.1 + 891 0.7 0.340727
Target:  5'- gGCGUCCGAGGGGCauccCGUGCcaaCCCg -3'
miRNA:   3'- gUGUAGGCUCUCUGcu--GCGCGcg-GGG- -5'
11430 3' -58.4 NC_003085.1 + 1409 0.68 0.422006
Target:  5'- aGCGUCCGgaagacguucgucgaAGAGGCGAUGaagGCuGCUCCg -3'
miRNA:   3'- gUGUAGGC---------------UCUCUGCUGCg--CG-CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 2133 0.8 0.067778
Target:  5'- aCACGUCCGAG-GACGGCG-GC-CCCCg -3'
miRNA:   3'- -GUGUAGGCUCuCUGCUGCgCGcGGGG- -5'
11430 3' -58.4 NC_003085.1 + 2351 0.75 0.148562
Target:  5'- gACAUCCGGGAGgcgcagugcgaggccGCGGCGCGCgaGCUCUc -3'
miRNA:   3'- gUGUAGGCUCUC---------------UGCUGCGCG--CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 2407 0.71 0.2741
Target:  5'- aCACcgCCGAGcuggugguGACGAagaCGCGCuGCCCUa -3'
miRNA:   3'- -GUGuaGGCUCu-------CUGCU---GCGCG-CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 3566 0.67 0.456077
Target:  5'- gGCggCCGGGcGGCaa-GCGCGCCUCg -3'
miRNA:   3'- gUGuaGGCUCuCUGcugCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 3706 0.7 0.340727
Target:  5'- cCGCGUCCGgugcugguGGuGACGACGCagGCaGCaCCCg -3'
miRNA:   3'- -GUGUAGGC--------UCuCUGCUGCG--CG-CG-GGG- -5'
11430 3' -58.4 NC_003085.1 + 4020 0.69 0.355383
Target:  5'- gGCAgaguugguggugCCGu--GACGACGCcaccGCGCCCCa -3'
miRNA:   3'- gUGUa-----------GGCucuCUGCUGCG----CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 5015 0.74 0.172541
Target:  5'- aCGCAggCCGAGaAGACGACGa-CGCCCg -3'
miRNA:   3'- -GUGUa-GGCUC-UCUGCUGCgcGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 5214 0.7 0.324962
Target:  5'- --aGUCCGAGc-GCGACGCG-GCCCg -3'
miRNA:   3'- gugUAGGCUCucUGCUGCGCgCGGGg -5'
11430 3' -58.4 NC_003085.1 + 5766 0.73 0.207327
Target:  5'- gCGCAUCCcccuuGAG-CGGCGCGUGCUCUa -3'
miRNA:   3'- -GUGUAGGcu---CUCuGCUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 6609 0.71 0.279575
Target:  5'- gGCcgggCCGGGAGGuggggagacgaaGACGCGCGCCgCCa -3'
miRNA:   3'- gUGua--GGCUCUCUg-----------CUGCGCGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 6987 0.73 0.20201
Target:  5'- uCACGUCUcGGAGAUGACGCcacGgGCCUCg -3'
miRNA:   3'- -GUGUAGGcUCUCUGCUGCG---CgCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 7260 0.67 0.485569
Target:  5'- gACAggcUCUGggugaaGGAGACGugGCGCaccGCCgCCa -3'
miRNA:   3'- gUGU---AGGC------UCUCUGCugCGCG---CGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 7334 0.66 0.545997
Target:  5'- gGCggCUGAG-GACG-CGggcuacaCGCGCCCCu -3'
miRNA:   3'- gUGuaGGCUCuCUGCuGC-------GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 7409 0.69 0.382516
Target:  5'- gCACgaGUCCGAcuGGGGCccucccgggaaGACGCGCGUCuCCa -3'
miRNA:   3'- -GUG--UAGGCU--CUCUG-----------CUGCGCGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 7454 0.68 0.418315
Target:  5'- cCACAUgCCcc-GGugGGCGuCGCGCCUCa -3'
miRNA:   3'- -GUGUA-GGcucUCugCUGC-GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 9181 0.66 0.547043
Target:  5'- --aGUCUGuGGGuCGGCGCggguacuccuGCGCCCUg -3'
miRNA:   3'- gugUAGGCuCUCuGCUGCG----------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 10187 0.66 0.535562
Target:  5'- cCGCAgcgCCGuAGAGGaGGCGCGCagcacaugcugcgGCCCa -3'
miRNA:   3'- -GUGUa--GGC-UCUCUgCUGCGCG-------------CGGGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.