miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 3' -58.4 NC_003085.1 + 49309 0.7 0.317285
Target:  5'- gGCGUcCCGGGAGGCGACcucccaGCucCGUCCCg -3'
miRNA:   3'- gUGUA-GGCUCUCUGCUG------CGc-GCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 48953 0.67 0.4956
Target:  5'- gCGCAUCCGGuccGGCc-CGCGCGCCUUc -3'
miRNA:   3'- -GUGUAGGCUcu-CUGcuGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 48734 0.67 0.505725
Target:  5'- uCGCcuGUCCGuGAG-CGGCGCGUcagGCgCCa -3'
miRNA:   3'- -GUG--UAGGCuCUCuGCUGCGCG---CGgGG- -5'
11430 3' -58.4 NC_003085.1 + 48354 0.75 0.168019
Target:  5'- uGCGccucUCCGAGuGACucACGCGCGCUCCu -3'
miRNA:   3'- gUGU----AGGCUCuCUGc-UGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 47896 0.68 0.418315
Target:  5'- cCGCG-CCGcacuGcAGGCGACGCGCacgGCCUCg -3'
miRNA:   3'- -GUGUaGGCu---C-UCUGCUGCGCG---CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 47462 0.66 0.568109
Target:  5'- cCGCAUCCGcucgguAGaAGugGACGgGCuGCUCa -3'
miRNA:   3'- -GUGUAGGC------UC-UCugCUGCgCG-CGGGg -5'
11430 3' -58.4 NC_003085.1 + 46834 0.7 0.309746
Target:  5'- uCGCcgCCGAGuuGCGACGCcaGCGUCUg -3'
miRNA:   3'- -GUGuaGGCUCucUGCUGCG--CGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 46118 0.68 0.409175
Target:  5'- gGCGUCgGGGAGcgucgucuguGCGGCGaccaGCGCCUg -3'
miRNA:   3'- gUGUAGgCUCUC----------UGCUGCg---CGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 45968 0.69 0.357038
Target:  5'- aGCGUCgccuUGGGGcGGCaGAUGCGCGCCUCu -3'
miRNA:   3'- gUGUAG----GCUCU-CUG-CUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 45568 0.69 0.403751
Target:  5'- uCGCAgcaCGAGcagugccaccgcgacAGACGGCGgGCGCgCCg -3'
miRNA:   3'- -GUGUag-GCUC---------------UCUGCUGCgCGCGgGG- -5'
11430 3' -58.4 NC_003085.1 + 45329 0.67 0.469723
Target:  5'- uCGC-UCCGuAGAG-CGGCGCuggagucccagcgcgGCGCCCa -3'
miRNA:   3'- -GUGuAGGC-UCUCuGCUGCG---------------CGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 45043 0.69 0.391273
Target:  5'- gCACcgUCGGGcaccGGAguaGAUGCGCGCCCa -3'
miRNA:   3'- -GUGuaGGCUC----UCUg--CUGCGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 44164 0.66 0.515938
Target:  5'- uCGCGga-GGGAGGCGACuucggucuccaGgGCGUCCCg -3'
miRNA:   3'- -GUGUaggCUCUCUGCUG-----------CgCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 44154 0.68 0.427578
Target:  5'- uCGCcUUC-AG-GACGGCGCGCGCCUUc -3'
miRNA:   3'- -GUGuAGGcUCuCUGCUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 44018 0.74 0.188737
Target:  5'- uGCAUCCGGGAG-CGgucauccaugaccgaGCGCagcgugacGCGCCCCu -3'
miRNA:   3'- gUGUAGGCUCUCuGC---------------UGCG--------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 43874 0.67 0.4956
Target:  5'- uGCAUCCGGGcaaguaGugGCGUGCCg- -3'
miRNA:   3'- gUGUAGGCUCucug--CugCGCGCGGgg -5'
11430 3' -58.4 NC_003085.1 + 43113 0.69 0.382516
Target:  5'- gCACG-CCGGGAacagccuuGGCGuagaGCGCGCCCa -3'
miRNA:   3'- -GUGUaGGCUCU--------CUGCug--CGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 42825 0.71 0.2741
Target:  5'- aCGgGUCCGGcgcuGGCGGCGCGCGucuucgucuCCCCa -3'
miRNA:   3'- -GUgUAGGCUcu--CUGCUGCGCGC---------GGGG- -5'
11430 3' -58.4 NC_003085.1 + 42561 0.67 0.465803
Target:  5'- gCGCGggCGAGGGcUGACGCGaugGCCUCa -3'
miRNA:   3'- -GUGUagGCUCUCuGCUGCGCg--CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 42233 0.69 0.382516
Target:  5'- uCACGUCCcacGGGACGGCuCGCGCUacuCCa -3'
miRNA:   3'- -GUGUAGGcu-CUCUGCUGcGCGCGG---GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.