miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 3' -58.4 NC_003085.1 + 25615 0.69 0.40016
Target:  5'- aGCGcgaCGAggagGAGACGACGaaggccggGCGCCCCg -3'
miRNA:   3'- gUGUag-GCU----CUCUGCUGCg-------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 11762 0.69 0.357038
Target:  5'- aCGCGUCuaCGAcGGuacGGCGGCGcCGCGCUCCg -3'
miRNA:   3'- -GUGUAG--GCU-CU---CUGCUGC-GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 45968 0.69 0.357038
Target:  5'- aGCGUCgccuUGGGGcGGCaGAUGCGCGCCUCu -3'
miRNA:   3'- gUGUAG----GCUCU-CUG-CUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 17749 0.69 0.362037
Target:  5'- cCGCcUUCGGGAGAUGGCGCGagagauugcugagGCCCg -3'
miRNA:   3'- -GUGuAGGCUCUCUGCUGCGCg------------CGGGg -5'
11430 3' -58.4 NC_003085.1 + 34893 0.69 0.365397
Target:  5'- uCACAUucaCCGAGAuaGGCGugGCG-GCCUa -3'
miRNA:   3'- -GUGUA---GGCUCU--CUGCugCGCgCGGGg -5'
11430 3' -58.4 NC_003085.1 + 7409 0.69 0.382516
Target:  5'- gCACgaGUCCGAcuGGGGCccucccgggaaGACGCGCGUCuCCa -3'
miRNA:   3'- -GUG--UAGGCU--CUCUG-----------CUGCGCGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 42233 0.69 0.382516
Target:  5'- uCACGUCCcacGGGACGGCuCGCGCUacuCCa -3'
miRNA:   3'- -GUGUAGGcu-CUCUGCUGcGCGCGG---GG- -5'
11430 3' -58.4 NC_003085.1 + 43113 0.69 0.382516
Target:  5'- gCACG-CCGGGAacagccuuGGCGuagaGCGCGCCCa -3'
miRNA:   3'- -GUGUaGGCUCU--------CUGCug--CGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 14199 0.69 0.386003
Target:  5'- aGCGUCCGGGcuGCGAcaagccCGCGCGCaagcggaagcaggggCCCg -3'
miRNA:   3'- gUGUAGGCUCucUGCU------GCGCGCG---------------GGG- -5'
11430 3' -58.4 NC_003085.1 + 4020 0.69 0.355383
Target:  5'- gGCAgaguugguggugCCGu--GACGACGCcaccGCGCCCCa -3'
miRNA:   3'- gUGUa-----------GGCucuCUGCUGCG----CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 188 0.7 0.348815
Target:  5'- aGCAUCUcGGAGugGACGCgGCGCg-- -3'
miRNA:   3'- gUGUAGGcUCUCugCUGCG-CGCGggg -5'
11430 3' -58.4 NC_003085.1 + 32844 0.7 0.332776
Target:  5'- ----cCCGAGAGGC--CGCGCGCCgCg -3'
miRNA:   3'- guguaGGCUCUCUGcuGCGCGCGGgG- -5'
11430 3' -58.4 NC_003085.1 + 2351 0.75 0.148562
Target:  5'- gACAUCCGGGAGgcgcagugcgaggccGCGGCGCGCgaGCUCUc -3'
miRNA:   3'- gUGUAGGCUCUC---------------UGCUGCGCG--CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 48354 0.75 0.168019
Target:  5'- uGCGccucUCCGAGuGACucACGCGCGCUCCu -3'
miRNA:   3'- gUGU----AGGCUCuCUGc-UGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 5766 0.73 0.207327
Target:  5'- gCGCAUCCcccuuGAG-CGGCGCGUGCUCUa -3'
miRNA:   3'- -GUGUAGGcu---CUCuGCUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 42825 0.71 0.2741
Target:  5'- aCGgGUCCGGcgcuGGCGGCGCGCGucuucgucuCCCCa -3'
miRNA:   3'- -GUgUAGGCUcu--CUGCUGCGCGC---------GGGG- -5'
11430 3' -58.4 NC_003085.1 + 12599 0.71 0.2741
Target:  5'- --gGUCCGAcuGACGcGCGUgGCGCCCCg -3'
miRNA:   3'- gugUAGGCUcuCUGC-UGCG-CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 16453 0.71 0.295078
Target:  5'- -uCAUUCGAGGcGACGGCaguguccgaccuGCGCGCCgCCu -3'
miRNA:   3'- guGUAGGCUCU-CUGCUG------------CGCGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 46834 0.7 0.309746
Target:  5'- uCGCcgCCGAGuuGCGACGCcaGCGUCUg -3'
miRNA:   3'- -GUGuaGGCUCucUGCUGCG--CGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 49309 0.7 0.317285
Target:  5'- gGCGUcCCGGGAGGCGACcucccaGCucCGUCCCg -3'
miRNA:   3'- gUGUA-GGCUCUCUGCUG------CGc-GCGGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.