miRNA display CGI


Results 1 - 20 of 87 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 3' -58.4 NC_003085.1 + 47462 0.66 0.568109
Target:  5'- cCGCAUCCGcucgguAGaAGugGACGgGCuGCUCa -3'
miRNA:   3'- -GUGUAGGC------UC-UCugCUGCgCG-CGGGg -5'
11430 3' -58.4 NC_003085.1 + 35621 0.68 0.446463
Target:  5'- gCACAUCCGGcacuucccuGGGCGGCGUcugcacgucaugGCGCCaCCu -3'
miRNA:   3'- -GUGUAGGCUc--------UCUGCUGCG------------CGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 44154 0.68 0.427578
Target:  5'- uCGCcUUC-AG-GACGGCGCGCGCCUUc -3'
miRNA:   3'- -GUGuAGGcUCuCUGCUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 38331 1.11 0.000335
Target:  5'- gCACAUCCGAGAGACGACGCGCGCCCCa -3'
miRNA:   3'- -GUGUAGGCUCUCUGCUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 13419 0.66 0.556495
Target:  5'- -cCAUCCGGaAGACGggggcauACgGCGUGCCCa -3'
miRNA:   3'- guGUAGGCUcUCUGC-------UG-CGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 35056 0.66 0.547043
Target:  5'- aGCAUCUccaAGGCGAUGCGC-UCCCg -3'
miRNA:   3'- gUGUAGGcucUCUGCUGCGCGcGGGG- -5'
11430 3' -58.4 NC_003085.1 + 10187 0.66 0.535562
Target:  5'- cCGCAgcgCCGuAGAGGaGGCGCGCagcacaugcugcgGCCCa -3'
miRNA:   3'- -GUGUa--GGC-UCUCUgCUGCGCG-------------CGGGg -5'
11430 3' -58.4 NC_003085.1 + 36982 0.66 0.526232
Target:  5'- uCugAUUCGuGAG-CGACG-GCGCCUUg -3'
miRNA:   3'- -GugUAGGCuCUCuGCUGCgCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 16394 0.67 0.4956
Target:  5'- gCACGUCCu---GGCGAUGCagcaagguaGCGUCCCa -3'
miRNA:   3'- -GUGUAGGcucuCUGCUGCG---------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 27049 0.67 0.455111
Target:  5'- --aGUCCGGGGucaccucGAUGGacuCGaCGCGCCCCg -3'
miRNA:   3'- gugUAGGCUCU-------CUGCU---GC-GCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 45329 0.67 0.469723
Target:  5'- uCGC-UCCGuAGAG-CGGCGCuggagucccagcgcgGCGCCCa -3'
miRNA:   3'- -GUGuAGGC-UCUCuGCUGCG---------------CGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 11357 0.67 0.504709
Target:  5'- gCACcUCCGAGAcgaugguGGCGGCGCcggacaccuGCGCUgCCg -3'
miRNA:   3'- -GUGuAGGCUCU-------CUGCUGCG---------CGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 11444 0.66 0.567051
Target:  5'- aGCGgucgCCGuuGGGGcCGACGCggugugaGCGUCCCa -3'
miRNA:   3'- gUGUa---GGC--UCUCuGCUGCG-------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 39114 0.67 0.456077
Target:  5'- aGCGUCCGcggugccucccgGGAGGCGACGUggcggGgGCCgCa -3'
miRNA:   3'- gUGUAGGC------------UCUCUGCUGCG-----CgCGGgG- -5'
11430 3' -58.4 NC_003085.1 + 34001 0.66 0.564935
Target:  5'- cCGCGUCUGGGuucgcGGCGAugauucagggauacCGCucGCGUCCCa -3'
miRNA:   3'- -GUGUAGGCUCu----CUGCU--------------GCG--CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 42024 0.67 0.505725
Target:  5'- gGCAUgUGgauGGAGACG-CGCGUcuucccgggaggGCCCCa -3'
miRNA:   3'- gUGUAgGC---UCUCUGCuGCGCG------------CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 37363 0.67 0.456077
Target:  5'- gGCGUCCGAcuuGCG-CGCGUcacccGCCCCg -3'
miRNA:   3'- gUGUAGGCUcucUGCuGCGCG-----CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 21986 0.68 0.431317
Target:  5'- cCACAggCCGAcGAGGUGGCcucccgcacgaaacuGCGCGCCCa -3'
miRNA:   3'- -GUGUa-GGCU-CUCUGCUG---------------CGCGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 15002 0.66 0.556495
Target:  5'- aGCGUCCcAGAGAcgcucaugcuggcCGACGuCGCcgGCUCCg -3'
miRNA:   3'- gUGUAGGcUCUCU-------------GCUGC-GCG--CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 17221 0.66 0.536603
Target:  5'- gCGCcgCUGGuGAGcACG-CG-GCGCCCCg -3'
miRNA:   3'- -GUGuaGGCU-CUC-UGCuGCgCGCGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.