miRNA display CGI


Results 1 - 20 of 87 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11430 3' -58.4 NC_003085.1 + 38331 1.11 0.000335
Target:  5'- gCACAUCCGAGAGACGACGCGCGCCCCa -3'
miRNA:   3'- -GUGUAGGCUCUCUGCUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 2133 0.8 0.067778
Target:  5'- aCACGUCCGAG-GACGGCG-GC-CCCCg -3'
miRNA:   3'- -GUGUAGGCUCuCUGCUGCgCGcGGGG- -5'
11430 3' -58.4 NC_003085.1 + 2351 0.75 0.148562
Target:  5'- gACAUCCGGGAGgcgcagugcgaggccGCGGCGCGCgaGCUCUc -3'
miRNA:   3'- gUGUAGGCUCUC---------------UGCUGCGCG--CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 10298 0.75 0.155085
Target:  5'- gCACAUCCGuccAGACGACGCcGUaGCCCUu -3'
miRNA:   3'- -GUGUAGGCuc-UCUGCUGCG-CG-CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 48354 0.75 0.168019
Target:  5'- uGCGccucUCCGAGuGACucACGCGCGCUCCu -3'
miRNA:   3'- gUGU----AGGCUCuCUGc-UGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 5015 0.74 0.172541
Target:  5'- aCGCAggCCGAGaAGACGACGa-CGCCCg -3'
miRNA:   3'- -GUGUa-GGCUC-UCUGCUGCgcGCGGGg -5'
11430 3' -58.4 NC_003085.1 + 44018 0.74 0.188737
Target:  5'- uGCAUCCGGGAG-CGgucauccaugaccgaGCGCagcgugacGCGCCCCu -3'
miRNA:   3'- gUGUAGGCUCUCuGC---------------UGCG--------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 6987 0.73 0.20201
Target:  5'- uCACGUCUcGGAGAUGACGCcacGgGCCUCg -3'
miRNA:   3'- -GUGUAGGcUCUCUGCUGCG---CgCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 5766 0.73 0.207327
Target:  5'- gCGCAUCCcccuuGAG-CGGCGCGUGCUCUa -3'
miRNA:   3'- -GUGUAGGcu---CUCuGCUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 35523 0.73 0.216086
Target:  5'- aCGC-UCCGcuucuucuuCGGCGCGCGCCCCg -3'
miRNA:   3'- -GUGuAGGCucucu----GCUGCGCGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 10617 0.72 0.241817
Target:  5'- gCGCG-CCGucgcaguGGGACGACGCggcaguGCGCCCUg -3'
miRNA:   3'- -GUGUaGGCu------CUCUGCUGCG------CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 18033 0.72 0.254334
Target:  5'- -cCAUCCGuGuAGACGACGCGCaUCCa -3'
miRNA:   3'- guGUAGGCuC-UCUGCUGCGCGcGGGg -5'
11430 3' -58.4 NC_003085.1 + 12599 0.71 0.2741
Target:  5'- --gGUCCGAcuGACGcGCGUgGCGCCCCg -3'
miRNA:   3'- gugUAGGCUcuCUGC-UGCG-CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 2407 0.71 0.2741
Target:  5'- aCACcgCCGAGcuggugguGACGAagaCGCGCuGCCCUa -3'
miRNA:   3'- -GUGuaGGCUCu-------CUGCU---GCGCG-CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 42825 0.71 0.2741
Target:  5'- aCGgGUCCGGcgcuGGCGGCGCGCGucuucgucuCCCCa -3'
miRNA:   3'- -GUgUAGGCUcu--CUGCUGCGCGC---------GGGG- -5'
11430 3' -58.4 NC_003085.1 + 6609 0.71 0.279575
Target:  5'- gGCcgggCCGGGAGGuggggagacgaaGACGCGCGCCgCCa -3'
miRNA:   3'- gUGua--GGCUCUCUg-----------CUGCGCGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 21802 0.71 0.280957
Target:  5'- uCGCcgCCGuAGucgguGGCGAUGCgGCGUCCCg -3'
miRNA:   3'- -GUGuaGGC-UCu----CUGCUGCG-CGCGGGG- -5'
11430 3' -58.4 NC_003085.1 + 16453 0.71 0.295078
Target:  5'- -uCAUUCGAGGcGACGGCaguguccgaccuGCGCGCCgCCu -3'
miRNA:   3'- guGUAGGCUCU-CUGCUG------------CGCGCGG-GG- -5'
11430 3' -58.4 NC_003085.1 + 41530 0.71 0.297968
Target:  5'- aCGCAUCCGcaacGAGuuggugcacgccgacAgGACGCGCucGCCCCg -3'
miRNA:   3'- -GUGUAGGCu---CUC---------------UgCUGCGCG--CGGGG- -5'
11430 3' -58.4 NC_003085.1 + 46834 0.7 0.309746
Target:  5'- uCGCcgCCGAGuuGCGACGCcaGCGUCUg -3'
miRNA:   3'- -GUGuaGGCUCucUGCUGCG--CGCGGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.