miRNA display CGI


Results 61 - 80 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11431 3' -60.1 NC_003085.1 + 2202 0.69 0.296559
Target:  5'- gACGCGUGGCggaCGGUGACgccugaGCACaACGCc -3'
miRNA:   3'- -UGCGCGCCG---GCCAUUGg-----CGUGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 31499 0.69 0.285143
Target:  5'- cCGCGCuGCCGGcgcuucaggUGGCCccagcagagcccagaGCGCCGCGCu -3'
miRNA:   3'- uGCGCGcCGGCC---------AUUGG---------------CGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 18347 0.69 0.282343
Target:  5'- gGCGCGCuGCuCGGgguugAGCCGCucGCCGCu- -3'
miRNA:   3'- -UGCGCGcCG-GCCa----UUGGCG--UGGUGug -5'
11431 3' -60.1 NC_003085.1 + 8944 0.69 0.282343
Target:  5'- aGCGCGUGGCCaaccugcgcuGGgccaagGGCCGCgGCC-CGCg -3'
miRNA:   3'- -UGCGCGCCGG----------CCa-----UUGGCG-UGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 15174 0.69 0.280952
Target:  5'- cUGCGCugacggcccggcuGaGCCGGUGcgccagcGCCGCGCCGCGg -3'
miRNA:   3'- uGCGCG-------------C-CGGCCAU-------UGGCGUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 15267 0.69 0.275441
Target:  5'- gGC-CGCGGCCGaGcucacccGCCGCGCC-CGCg -3'
miRNA:   3'- -UGcGCGCCGGC-Cau-----UGGCGUGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 38778 0.69 0.275441
Target:  5'- cGCGCGCagGGCUGGUGugUcCAgCACGCc -3'
miRNA:   3'- -UGCGCG--CCGGCCAUugGcGUgGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 17299 0.69 0.268673
Target:  5'- gGCGCaGCcuGGCCGacgccGUAACC-CACCGCGCc -3'
miRNA:   3'- -UGCG-CG--CCGGC-----CAUUGGcGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 8223 0.69 0.268673
Target:  5'- cGCGCGUGGCguuGUAgagGCCGCACguCACc -3'
miRNA:   3'- -UGCGCGCCGgc-CAU---UGGCGUGguGUG- -5'
11431 3' -60.1 NC_003085.1 + 6922 0.69 0.268673
Target:  5'- cGCGCGCuGGCCGaGgcGaaGCgggagGCCACGCa -3'
miRNA:   3'- -UGCGCG-CCGGC-CauUggCG-----UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 27838 0.69 0.268673
Target:  5'- cUGCGCcauGGCCgucucgcgcgGGUcGCuCGCGCCACGCa -3'
miRNA:   3'- uGCGCG---CCGG----------CCAuUG-GCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 20984 0.69 0.268673
Target:  5'- uUGCGCGucagcacgcaGCCGGUGAgCGCcucaauCCACGCc -3'
miRNA:   3'- uGCGCGC----------CGGCCAUUgGCGu-----GGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 12422 0.69 0.268673
Target:  5'- aGCGCGguacaGGCCGGUGuCCGgguCGCCACu- -3'
miRNA:   3'- -UGCGCg----CCGGCCAUuGGC---GUGGUGug -5'
11431 3' -60.1 NC_003085.1 + 6288 0.69 0.264678
Target:  5'- cCGCGCGG-CGGUGgagcgacuggagcagGCCGagcgggaACCGCGCa -3'
miRNA:   3'- uGCGCGCCgGCCAU---------------UGGCg------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 5686 0.7 0.254259
Target:  5'- gACGC-UGGCCGGUGuugaguccaagcCCGCGCC-CACc -3'
miRNA:   3'- -UGCGcGCCGGCCAUu-----------GGCGUGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 23797 0.7 0.242942
Target:  5'- uCGUcCGGCCGGUAGUCGCAguCCGCAg -3'
miRNA:   3'- uGCGcGCCGGCCAUUGGCGU--GGUGUg -5'
11431 3' -60.1 NC_003085.1 + 40798 0.7 0.242942
Target:  5'- cGCGCGCGGaCGGgcugaAACCGUGCUGCugGCg -3'
miRNA:   3'- -UGCGCGCCgGCCa----UUGGCGUGGUG--UG- -5'
11431 3' -60.1 NC_003085.1 + 3403 0.7 0.236838
Target:  5'- -aGCGCcgaagGGCgGGUGcaGCCGUAUCGCGCc -3'
miRNA:   3'- ugCGCG-----CCGgCCAU--UGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 31341 0.7 0.236838
Target:  5'- cCGCGCGGacguaCCGGUAGgC-CGCCAUGCg -3'
miRNA:   3'- uGCGCGCC-----GGCCAUUgGcGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 6700 0.7 0.230863
Target:  5'- gGCuuGCGGCCGcc--CUGCACCGCACc -3'
miRNA:   3'- -UGcgCGCCGGCcauuGGCGUGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.