miRNA display CGI


Results 41 - 60 of 109 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11431 3' -60.1 NC_003085.1 + 37130 0.67 0.361437
Target:  5'- cGCGUGCccuugcccagguucgGGUCGGUGugcGCCGCaacccagcggaccACCGCGCc -3'
miRNA:   3'- -UGCGCG---------------CCGGCCAU---UGGCG-------------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 16182 0.67 0.358928
Target:  5'- cCGCGCuGGUucgaGGUGAgCCGUgACCGCGCu -3'
miRNA:   3'- uGCGCG-CCGg---CCAUU-GGCG-UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 613 0.67 0.358094
Target:  5'- cCGuCGCGGCCuacggcgGGUuguGCUGCGCCaagGCGCu -3'
miRNA:   3'- uGC-GCGCCGG-------CCAu--UGGCGUGG---UGUG- -5'
11431 3' -60.1 NC_003085.1 + 5497 0.67 0.350651
Target:  5'- gGCGUGgGGCCGG--GCCGUGagggaGCACg -3'
miRNA:   3'- -UGCGCgCCGGCCauUGGCGUgg---UGUG- -5'
11431 3' -60.1 NC_003085.1 + 14875 0.68 0.34251
Target:  5'- gACGUGCuGCCGGacaccuucaaccUGGCUGUGCgGCGCa -3'
miRNA:   3'- -UGCGCGcCGGCC------------AUUGGCGUGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 17858 0.68 0.34251
Target:  5'- --cCGCGGCCGGUGccuccugggGCUGCACaACAa -3'
miRNA:   3'- ugcGCGCCGGCCAU---------UGGCGUGgUGUg -5'
11431 3' -60.1 NC_003085.1 + 35782 0.68 0.340095
Target:  5'- gGCGCGaCGGCCGGUGuccuuguccaugggGuuGCgcucccggaggaGCCGCAg -3'
miRNA:   3'- -UGCGC-GCCGGCCAU--------------UggCG------------UGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 32153 0.68 0.339292
Target:  5'- -gGCGCGGUgGGUuacggcgucggccaGGCUGCGCCaguggugGCGCg -3'
miRNA:   3'- ugCGCGCCGgCCA--------------UUGGCGUGG-------UGUG- -5'
11431 3' -60.1 NC_003085.1 + 34727 0.68 0.334507
Target:  5'- gGCGCGUGGCauaccGAUgGCAUCGCGCg -3'
miRNA:   3'- -UGCGCGCCGgcca-UUGgCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 29508 0.68 0.334507
Target:  5'- -gGCGCGGCCaugGGCCaGCACaACGCg -3'
miRNA:   3'- ugCGCGCCGGccaUUGG-CGUGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 49010 0.68 0.325862
Target:  5'- aGCGC-CGGCUGGcccuCCGCGCCgugugacucguagACGCg -3'
miRNA:   3'- -UGCGcGCCGGCCauu-GGCGUGG-------------UGUG- -5'
11431 3' -60.1 NC_003085.1 + 6017 0.68 0.318914
Target:  5'- -gGCGCGGauguacgcCCGGacGCCGCGCCAgGa -3'
miRNA:   3'- ugCGCGCC--------GGCCauUGGCGUGGUgUg -5'
11431 3' -60.1 NC_003085.1 + 41256 0.68 0.318914
Target:  5'- cACGCGCGGCaGGcugGACUGgCggGCCAUGCa -3'
miRNA:   3'- -UGCGCGCCGgCCa--UUGGC-G--UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 48041 0.68 0.318914
Target:  5'- gGCGCGCuuGGCUguGGUGACCGCGaugauUCGgGCu -3'
miRNA:   3'- -UGCGCG--CCGG--CCAUUGGCGU-----GGUgUG- -5'
11431 3' -60.1 NC_003085.1 + 32898 0.68 0.318914
Target:  5'- uCGCaGUGGCCGG-----GCGCCACGCa -3'
miRNA:   3'- uGCG-CGCCGGCCauuggCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 46971 0.68 0.318148
Target:  5'- -aGUGCGGCUGaagcGCCGCgcugaugGCCACACu -3'
miRNA:   3'- ugCGCGCCGGCcau-UGGCG-------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 25157 0.68 0.303873
Target:  5'- -gGUGUGGCCGGcGACCGUGgCCugGu -3'
miRNA:   3'- ugCGCGCCGGCCaUUGGCGU-GGugUg -5'
11431 3' -60.1 NC_003085.1 + 19209 0.68 0.303872
Target:  5'- -gGgGCGGCgGG-GGCUggGCGCCGCGCa -3'
miRNA:   3'- ugCgCGCCGgCCaUUGG--CGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 12237 0.68 0.303872
Target:  5'- aGCGCgGCGGCUGG--GCCGCcagaauugaagGCCGCugGCg -3'
miRNA:   3'- -UGCG-CGCCGGCCauUGGCG-----------UGGUG--UG- -5'
11431 3' -60.1 NC_003085.1 + 45757 0.69 0.296559
Target:  5'- uCGCGUGGCaCGucgcgcugcGUGGCCGCAUCccaACGCa -3'
miRNA:   3'- uGCGCGCCG-GC---------CAUUGGCGUGG---UGUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.