miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11431 3' -60.1 NC_003085.1 + 37862 0.66 0.408659
Target:  5'- cUGCGCuGGCCGGccagacgucggagguGCUgguggGCACCACGCc -3'
miRNA:   3'- uGCGCG-CCGGCCau-------------UGG-----CGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 13576 0.66 0.402323
Target:  5'- cGCGCGUGGacgugggcaCCGG-AGgCGCGCCAUgACg -3'
miRNA:   3'- -UGCGCGCC---------GGCCaUUgGCGUGGUG-UG- -5'
11431 3' -60.1 NC_003085.1 + 34552 0.66 0.402323
Target:  5'- -aGCGCcaccaGCCGGcccGCgUGCGCCGCACa -3'
miRNA:   3'- ugCGCGc----CGGCCau-UG-GCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 40077 0.67 0.396943
Target:  5'- cCGCGCuGGCCGGUAcucaagcaGCCcuuccuugucggccuGCGuCCACAg -3'
miRNA:   3'- uGCGCG-CCGGCCAU--------UGG---------------CGU-GGUGUg -5'
11431 3' -60.1 NC_003085.1 + 35881 0.67 0.393381
Target:  5'- gGCGCGCcuCCGGUGcCCaCGuCCACGCg -3'
miRNA:   3'- -UGCGCGccGGCCAUuGGcGU-GGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 11644 0.67 0.393381
Target:  5'- cGCGCGCGGa-GGgcAUUGCGCCGgGu -3'
miRNA:   3'- -UGCGCGCCggCCauUGGCGUGGUgUg -5'
11431 3' -60.1 NC_003085.1 + 11517 0.67 0.393381
Target:  5'- -gGUGUGGUgCGGUuACCG-GCCGCGCg -3'
miRNA:   3'- ugCGCGCCG-GCCAuUGGCgUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 708 0.67 0.393381
Target:  5'- -gGCGCGGCCugagcaGGUccacCCGCGCCucaguCGCc -3'
miRNA:   3'- ugCGCGCCGG------CCAuu--GGCGUGGu----GUG- -5'
11431 3' -60.1 NC_003085.1 + 5894 0.67 0.393381
Target:  5'- -gGCGCcgGGUCGGUGACgCGgGCCuaucuCGCg -3'
miRNA:   3'- ugCGCG--CCGGCCAUUG-GCgUGGu----GUG- -5'
11431 3' -60.1 NC_003085.1 + 24128 0.67 0.384569
Target:  5'- aGCGCGCGccauccaccuuGUCGGUGGCC--ACCACGg -3'
miRNA:   3'- -UGCGCGC-----------CGGCCAUUGGcgUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 26129 0.67 0.384569
Target:  5'- aACGaCGCGGCCGuGgaacucgGGCUGCugGCCAC-Cg -3'
miRNA:   3'- -UGC-GCGCCGGC-Ca------UUGGCG--UGGUGuG- -5'
11431 3' -60.1 NC_003085.1 + 10800 0.67 0.384569
Target:  5'- cGCGCaGCGGUgcgagUGGaAACgCGCACCGgGCa -3'
miRNA:   3'- -UGCG-CGCCG-----GCCaUUG-GCGUGGUgUG- -5'
11431 3' -60.1 NC_003085.1 + 10470 0.67 0.384569
Target:  5'- gGCGCcccuCGGCUGGccgaccuGCUGCGCgGCGCa -3'
miRNA:   3'- -UGCGc---GCCGGCCau-----UGGCGUGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 7987 0.67 0.384569
Target:  5'- -aGCGCuGGCgCGGUAcuucacCCGCGCCccagccuuGCGCg -3'
miRNA:   3'- ugCGCG-CCG-GCCAUu-----GGCGUGG--------UGUG- -5'
11431 3' -60.1 NC_003085.1 + 34192 0.67 0.384569
Target:  5'- -gGCGCGGCgGGUGAgcUCG-GCCGCGg -3'
miRNA:   3'- ugCGCGCCGgCCAUU--GGCgUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 19390 0.67 0.383694
Target:  5'- cCGCGUgGGCCGGUAccccagcaagGCCcagggcgGCGCCACc- -3'
miRNA:   3'- uGCGCG-CCGGCCAU----------UGG-------CGUGGUGug -5'
11431 3' -60.1 NC_003085.1 + 17159 0.67 0.375888
Target:  5'- gGCGCGCugaGGCgGacGUGGCC-CACCugACg -3'
miRNA:   3'- -UGCGCG---CCGgC--CAUUGGcGUGGugUG- -5'
11431 3' -60.1 NC_003085.1 + 11761 0.67 0.375888
Target:  5'- cACGCGUcuacgaCGGUAcgGCgGCGCCGCGCu -3'
miRNA:   3'- -UGCGCGccg---GCCAU--UGgCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 14930 0.67 0.375888
Target:  5'- aGCGCGUGGCgcuccaacucgCGG-AACUGCGCgaaGCGCu -3'
miRNA:   3'- -UGCGCGCCG-----------GCCaUUGGCGUGg--UGUG- -5'
11431 3' -60.1 NC_003085.1 + 5549 0.67 0.367341
Target:  5'- uGCGCGCaaagGGCCuGgcGCCGCgaacggugcGCCACGu -3'
miRNA:   3'- -UGCGCG----CCGGcCauUGGCG---------UGGUGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.