Results 21 - 40 of 109 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11431 | 3' | -60.1 | NC_003085.1 | + | 41256 | 0.68 | 0.318914 |
Target: 5'- cACGCGCGGCaGGcugGACUGgCggGCCAUGCa -3' miRNA: 3'- -UGCGCGCCGgCCa--UUGGC-G--UGGUGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 6017 | 0.68 | 0.318914 |
Target: 5'- -gGCGCGGauguacgcCCGGacGCCGCGCCAgGa -3' miRNA: 3'- ugCGCGCC--------GGCCauUGGCGUGGUgUg -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 40816 | 0.71 | 0.192527 |
Target: 5'- cGCGCGUcccGGCCGGc--CUGUACCugACg -3' miRNA: 3'- -UGCGCG---CCGGCCauuGGCGUGGugUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 12290 | 0.72 | 0.187529 |
Target: 5'- cACGCGaCGGCgCGGUGGuCCGCuggguuGCgGCGCa -3' miRNA: 3'- -UGCGC-GCCG-GCCAUU-GGCG------UGgUGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 19062 | 0.72 | 0.173216 |
Target: 5'- gGCGCGCGgcggagcaggcGCCGGgcccggacgGAgUGCGCCGCACc -3' miRNA: 3'- -UGCGCGC-----------CGGCCa--------UUgGCGUGGUGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 41457 | 0.73 | 0.140096 |
Target: 5'- gGCGCGCaaGGCUGGggcgcgggugaaguACCGCGCCAgCGCu -3' miRNA: 3'- -UGCGCG--CCGGCCau------------UGGCGUGGU-GUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 27370 | 0.75 | 0.10622 |
Target: 5'- aGCGCGUcuGGCUGGUGgaACgCGaCACCGCGCg -3' miRNA: 3'- -UGCGCG--CCGGCCAU--UG-GC-GUGGUGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 14269 | 0.75 | 0.10332 |
Target: 5'- gACGUGCGGCCaGGcugcuGCCGUcaagcGCCGCGCa -3' miRNA: 3'- -UGCGCGCCGG-CCau---UGGCG-----UGGUGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 7127 | 0.76 | 0.092447 |
Target: 5'- cACGCGcCGGCUGGUGacACCGCAgccgacgaauCCGCAUc -3' miRNA: 3'- -UGCGC-GCCGGCCAU--UGGCGU----------GGUGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 26714 | 0.79 | 0.057264 |
Target: 5'- cGCGCGCaGGgCGGUGACgGCGCgGCGCc -3' miRNA: 3'- -UGCGCG-CCgGCCAUUGgCGUGgUGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 19702 | 0.71 | 0.192527 |
Target: 5'- gGCGCGCGG-CGGcauCUGCACCuucgaGCACg -3' miRNA: 3'- -UGCGCGCCgGCCauuGGCGUGG-----UGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 10150 | 0.71 | 0.197641 |
Target: 5'- cUGCGCGGCgGGgaguACCGCgaggACCGgGCg -3' miRNA: 3'- uGCGCGCCGgCCau--UGGCG----UGGUgUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 25157 | 0.68 | 0.303873 |
Target: 5'- -gGUGUGGCCGGcGACCGUGgCCugGu -3' miRNA: 3'- ugCGCGCCGGCCaUUGGCGU-GGugUg -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 8944 | 0.69 | 0.282343 |
Target: 5'- aGCGCGUGGCCaaccugcgcuGGgccaagGGCCGCgGCC-CGCg -3' miRNA: 3'- -UGCGCGCCGG----------CCa-----UUGGCG-UGGuGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 15174 | 0.69 | 0.280952 |
Target: 5'- cUGCGCugacggcccggcuGaGCCGGUGcgccagcGCCGCGCCGCGg -3' miRNA: 3'- uGCGCG-------------C-CGGCCAU-------UGGCGUGGUGUg -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 15267 | 0.69 | 0.275441 |
Target: 5'- gGC-CGCGGCCGaGcucacccGCCGCGCC-CGCg -3' miRNA: 3'- -UGcGCGCCGGC-Cau-----UGGCGUGGuGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 23797 | 0.7 | 0.242942 |
Target: 5'- uCGUcCGGCCGGUAGUCGCAguCCGCAg -3' miRNA: 3'- uGCGcGCCGGCCAUUGGCGU--GGUGUg -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 3403 | 0.7 | 0.236838 |
Target: 5'- -aGCGCcgaagGGCgGGUGcaGCCGUAUCGCGCc -3' miRNA: 3'- ugCGCG-----CCGgCCAU--UGGCGUGGUGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 6700 | 0.7 | 0.230863 |
Target: 5'- gGCuuGCGGCCGcc--CUGCACCGCACc -3' miRNA: 3'- -UGcgCGCCGGCcauuGGCGUGGUGUG- -5' |
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11431 | 3' | -60.1 | NC_003085.1 | + | 3557 | 0.7 | 0.225016 |
Target: 5'- cACGCucaagGCGGCCGGgcggcAAgCGCGCCuCGCu -3' miRNA: 3'- -UGCG-----CGCCGGCCa----UUgGCGUGGuGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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