miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11431 3' -60.1 NC_003085.1 + 41256 0.68 0.318914
Target:  5'- cACGCGCGGCaGGcugGACUGgCggGCCAUGCa -3'
miRNA:   3'- -UGCGCGCCGgCCa--UUGGC-G--UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 6700 0.7 0.230863
Target:  5'- gGCuuGCGGCCGcc--CUGCACCGCACc -3'
miRNA:   3'- -UGcgCGCCGGCcauuGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 3403 0.7 0.236838
Target:  5'- -aGCGCcgaagGGCgGGUGcaGCCGUAUCGCGCc -3'
miRNA:   3'- ugCGCG-----CCGgCCAU--UGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 23797 0.7 0.242942
Target:  5'- uCGUcCGGCCGGUAGUCGCAguCCGCAg -3'
miRNA:   3'- uGCGcGCCGGCCAUUGGCGU--GGUGUg -5'
11431 3' -60.1 NC_003085.1 + 15267 0.69 0.275441
Target:  5'- gGC-CGCGGCCGaGcucacccGCCGCGCC-CGCg -3'
miRNA:   3'- -UGcGCGCCGGC-Cau-----UGGCGUGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 15174 0.69 0.280952
Target:  5'- cUGCGCugacggcccggcuGaGCCGGUGcgccagcGCCGCGCCGCGg -3'
miRNA:   3'- uGCGCG-------------C-CGGCCAU-------UGGCGUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 8944 0.69 0.282343
Target:  5'- aGCGCGUGGCCaaccugcgcuGGgccaagGGCCGCgGCC-CGCg -3'
miRNA:   3'- -UGCGCGCCGG----------CCa-----UUGGCG-UGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 25157 0.68 0.303873
Target:  5'- -gGUGUGGCCGGcGACCGUGgCCugGu -3'
miRNA:   3'- ugCGCGCCGGCCaUUGGCGU-GGugUg -5'
11431 3' -60.1 NC_003085.1 + 6017 0.68 0.318914
Target:  5'- -gGCGCGGauguacgcCCGGacGCCGCGCCAgGa -3'
miRNA:   3'- ugCGCGCC--------GGCCauUGGCGUGGUgUg -5'
11431 3' -60.1 NC_003085.1 + 3557 0.7 0.225016
Target:  5'- cACGCucaagGCGGCCGGgcggcAAgCGCGCCuCGCu -3'
miRNA:   3'- -UGCG-----CGCCGGCCa----UUgGCGUGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 10150 0.71 0.197641
Target:  5'- cUGCGCGGCgGGgaguACCGCgaggACCGgGCg -3'
miRNA:   3'- uGCGCGCCGgCCau--UGGCG----UGGUgUG- -5'
11431 3' -60.1 NC_003085.1 + 19702 0.71 0.192527
Target:  5'- gGCGCGCGG-CGGcauCUGCACCuucgaGCACg -3'
miRNA:   3'- -UGCGCGCCgGCCauuGGCGUGG-----UGUG- -5'
11431 3' -60.1 NC_003085.1 + 26714 0.79 0.057264
Target:  5'- cGCGCGCaGGgCGGUGACgGCGCgGCGCc -3'
miRNA:   3'- -UGCGCG-CCgGCCAUUGgCGUGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 7127 0.76 0.092447
Target:  5'- cACGCGcCGGCUGGUGacACCGCAgccgacgaauCCGCAUc -3'
miRNA:   3'- -UGCGC-GCCGGCCAU--UGGCGU----------GGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 14269 0.75 0.10332
Target:  5'- gACGUGCGGCCaGGcugcuGCCGUcaagcGCCGCGCa -3'
miRNA:   3'- -UGCGCGCCGG-CCau---UGGCG-----UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 27370 0.75 0.10622
Target:  5'- aGCGCGUcuGGCUGGUGgaACgCGaCACCGCGCg -3'
miRNA:   3'- -UGCGCG--CCGGCCAU--UG-GC-GUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 41457 0.73 0.140096
Target:  5'- gGCGCGCaaGGCUGGggcgcgggugaaguACCGCGCCAgCGCu -3'
miRNA:   3'- -UGCGCG--CCGGCCau------------UGGCGUGGU-GUG- -5'
11431 3' -60.1 NC_003085.1 + 19062 0.72 0.173216
Target:  5'- gGCGCGCGgcggagcaggcGCCGGgcccggacgGAgUGCGCCGCACc -3'
miRNA:   3'- -UGCGCGC-----------CGGCCa--------UUgGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 12290 0.72 0.187529
Target:  5'- cACGCGaCGGCgCGGUGGuCCGCuggguuGCgGCGCa -3'
miRNA:   3'- -UGCGC-GCCG-GCCAUU-GGCG------UGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 40816 0.71 0.192527
Target:  5'- cGCGCGUcccGGCCGGc--CUGUACCugACg -3'
miRNA:   3'- -UGCGCG---CCGGCCauuGGCGUGGugUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.