miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11431 3' -60.1 NC_003085.1 + 509 0.73 0.159886
Target:  5'- gGCGCGCgGGCCGGaccggAugCGCGCUGCc- -3'
miRNA:   3'- -UGCGCG-CCGGCCa----UugGCGUGGUGug -5'
11431 3' -60.1 NC_003085.1 + 613 0.67 0.358094
Target:  5'- cCGuCGCGGCCuacggcgGGUuguGCUGCGCCaagGCGCu -3'
miRNA:   3'- uGC-GCGCCGG-------CCAu--UGGCGUGG---UGUG- -5'
11431 3' -60.1 NC_003085.1 + 708 0.67 0.393381
Target:  5'- -gGCGCGGCCugagcaGGUccacCCGCGCCucaguCGCc -3'
miRNA:   3'- ugCGCGCCGG------CCAuu--GGCGUGGu----GUG- -5'
11431 3' -60.1 NC_003085.1 + 1182 0.66 0.411394
Target:  5'- uACGaCGCuGCCGGggcgaccauUGACCaaccucaccccgGCGCCGCGCu -3'
miRNA:   3'- -UGC-GCGcCGGCC---------AUUGG------------CGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 1932 0.71 0.192527
Target:  5'- cGCuCGCGGgcucgucggucCCGGUGGCCGUAUCGCAg -3'
miRNA:   3'- -UGcGCGCC-----------GGCCAUUGGCGUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 2202 0.69 0.296559
Target:  5'- gACGCGUGGCggaCGGUGACgccugaGCACaACGCc -3'
miRNA:   3'- -UGCGCGCCG---GCCAUUGg-----CGUGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 2725 0.66 0.429909
Target:  5'- uCGgGCGGCUGGcAGCgCGCGCgaagGCGCu -3'
miRNA:   3'- uGCgCGCCGGCCaUUG-GCGUGg---UGUG- -5'
11431 3' -60.1 NC_003085.1 + 3403 0.7 0.236838
Target:  5'- -aGCGCcgaagGGCgGGUGcaGCCGUAUCGCGCc -3'
miRNA:   3'- ugCGCG-----CCGgCCAU--UGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 3557 0.7 0.225016
Target:  5'- cACGCucaagGCGGCCGGgcggcAAgCGCGCCuCGCu -3'
miRNA:   3'- -UGCG-----CGCCGGCCa----UUgGCGUGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 4215 0.79 0.052429
Target:  5'- gACGCGCGGCgGGUuacgcugagcgucAGCCGgGCCGCAg -3'
miRNA:   3'- -UGCGCGCCGgCCA-------------UUGGCgUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 5497 0.67 0.350651
Target:  5'- gGCGUGgGGCCGG--GCCGUGagggaGCACg -3'
miRNA:   3'- -UGCGCgCCGGCCauUGGCGUgg---UGUG- -5'
11431 3' -60.1 NC_003085.1 + 5549 0.67 0.367341
Target:  5'- uGCGCGCaaagGGCCuGgcGCCGCgaacggugcGCCACGu -3'
miRNA:   3'- -UGCGCG----CCGGcCauUGGCG---------UGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 5686 0.7 0.254259
Target:  5'- gACGC-UGGCCGGUGuugaguccaagcCCGCGCC-CACc -3'
miRNA:   3'- -UGCGcGCCGGCCAUu-----------GGCGUGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 5894 0.67 0.393381
Target:  5'- -gGCGCcgGGUCGGUGACgCGgGCCuaucuCGCg -3'
miRNA:   3'- ugCGCG--CCGGCCAUUG-GCgUGGu----GUG- -5'
11431 3' -60.1 NC_003085.1 + 6017 0.68 0.318914
Target:  5'- -gGCGCGGauguacgcCCGGacGCCGCGCCAgGa -3'
miRNA:   3'- ugCGCGCC--------GGCCauUGGCGUGGUgUg -5'
11431 3' -60.1 NC_003085.1 + 6288 0.69 0.264678
Target:  5'- cCGCGCGG-CGGUGgagcgacuggagcagGCCGagcgggaACCGCGCa -3'
miRNA:   3'- uGCGCGCCgGCCAU---------------UGGCg------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 6367 0.72 0.177405
Target:  5'- gGCGUgcugcugGCGGCCGGUcguuucuuccucGGCCGUgucuCCACGCa -3'
miRNA:   3'- -UGCG-------CGCCGGCCA------------UUGGCGu---GGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 6700 0.7 0.230863
Target:  5'- gGCuuGCGGCCGcc--CUGCACCGCACc -3'
miRNA:   3'- -UGcgCGCCGGCcauuGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 6704 0.66 0.448905
Target:  5'- cCGaCGCGGCgaUGGauGCCGUccACCGCGCc -3'
miRNA:   3'- uGC-GCGCCG--GCCauUGGCG--UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 6922 0.69 0.268673
Target:  5'- cGCGCGCuGGCCGaGgcGaaGCgggagGCCACGCa -3'
miRNA:   3'- -UGCGCG-CCGGC-CauUggCG-----UGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.