miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11431 3' -60.1 NC_003085.1 + 49010 0.68 0.325862
Target:  5'- aGCGC-CGGCUGGcccuCCGCGCCgugugacucguagACGCg -3'
miRNA:   3'- -UGCGcGCCGGCCauu-GGCGUGG-------------UGUG- -5'
11431 3' -60.1 NC_003085.1 + 48872 0.66 0.415057
Target:  5'- gGCGCcagucgagacacccuGCGGCgGG-GGCCGCcCUGCACu -3'
miRNA:   3'- -UGCG---------------CGCCGgCCaUUGGCGuGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 48373 0.66 0.428971
Target:  5'- cACGCGCGcuccugaGCgCGGcgAGCaGCGCCGCAUu -3'
miRNA:   3'- -UGCGCGC-------CG-GCCa-UUGgCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 48041 0.68 0.318914
Target:  5'- gGCGCGCuuGGCUguGGUGACCGCGaugauUCGgGCu -3'
miRNA:   3'- -UGCGCG--CCGG--CCAUUGGCGU-----GGUgUG- -5'
11431 3' -60.1 NC_003085.1 + 47875 0.71 0.192527
Target:  5'- cAUGCacaCGGCaCGcGUAcGCCGCGCCGCACu -3'
miRNA:   3'- -UGCGc--GCCG-GC-CAU-UGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 47147 0.71 0.197641
Target:  5'- aGCG-GCGGCCGGUGgcgaggcagGCCaGCGCCGUGCu -3'
miRNA:   3'- -UGCgCGCCGGCCAU---------UGG-CGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 46971 0.68 0.318148
Target:  5'- -aGUGCGGCUGaagcGCCGCgcugaugGCCACACu -3'
miRNA:   3'- ugCGCGCCGGCcau-UGGCG-------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 45757 0.69 0.296559
Target:  5'- uCGCGUGGCaCGucgcgcugcGUGGCCGCAUCccaACGCa -3'
miRNA:   3'- uGCGCGCCG-GC---------CAUUGGCGUGG---UGUG- -5'
11431 3' -60.1 NC_003085.1 + 45228 0.72 0.172757
Target:  5'- aGCGCuGCGGcCCGGcugacgcucagcgUAACC-CGCCGCGCg -3'
miRNA:   3'- -UGCG-CGCC-GGCC-------------AUUGGcGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 41457 0.73 0.140096
Target:  5'- gGCGCGCaaGGCUGGggcgcgggugaaguACCGCGCCAgCGCu -3'
miRNA:   3'- -UGCGCG--CCGGCCau------------UGGCGUGGU-GUG- -5'
11431 3' -60.1 NC_003085.1 + 41256 0.68 0.318914
Target:  5'- cACGCGCGGCaGGcugGACUGgCggGCCAUGCa -3'
miRNA:   3'- -UGCGCGCCGgCCa--UUGGC-G--UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 40816 0.71 0.192527
Target:  5'- cGCGCGUcccGGCCGGc--CUGUACCugACg -3'
miRNA:   3'- -UGCGCG---CCGGCCauuGGCGUGGugUG- -5'
11431 3' -60.1 NC_003085.1 + 40798 0.7 0.242942
Target:  5'- cGCGCGCGGaCGGgcugaAACCGUGCUGCugGCg -3'
miRNA:   3'- -UGCGCGCCgGCCa----UUGGCGUGGUG--UG- -5'
11431 3' -60.1 NC_003085.1 + 40077 0.67 0.396943
Target:  5'- cCGCGCuGGCCGGUAcucaagcaGCCcuuccuugucggccuGCGuCCACAg -3'
miRNA:   3'- uGCGCG-CCGGCCAU--------UGG---------------CGU-GGUGUg -5'
11431 3' -60.1 NC_003085.1 + 39137 0.75 0.112252
Target:  5'- gGCGaCGUGGCgGG-GGCCGCAUCGCAUu -3'
miRNA:   3'- -UGC-GCGCCGgCCaUUGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 38778 0.69 0.275441
Target:  5'- cGCGCGCagGGCUGGUGugUcCAgCACGCc -3'
miRNA:   3'- -UGCGCG--CCGGCCAUugGcGUgGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 37942 1.07 0.000372
Target:  5'- aACGCGCGGCCGGUAACCGCACCACACc -3'
miRNA:   3'- -UGCGCGCCGGCCAUUGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 37862 0.66 0.408659
Target:  5'- cUGCGCuGGCCGGccagacgucggagguGCUgguggGCACCACGCc -3'
miRNA:   3'- uGCGCG-CCGGCCau-------------UGG-----CGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 37835 0.71 0.192527
Target:  5'- cCGCGCGcGCUGGUAGCaGCcCCuGCACa -3'
miRNA:   3'- uGCGCGC-CGGCCAUUGgCGuGG-UGUG- -5'
11431 3' -60.1 NC_003085.1 + 37130 0.67 0.361437
Target:  5'- cGCGUGCccuugcccagguucgGGUCGGUGugcGCCGCaacccagcggaccACCGCGCc -3'
miRNA:   3'- -UGCGCG---------------CCGGCCAU---UGGCG-------------UGGUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.