miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11431 3' -60.1 NC_003085.1 + 37942 1.07 0.000372
Target:  5'- aACGCGCGGCCGGUAACCGCACCACACc -3'
miRNA:   3'- -UGCGCGCCGGCCAUUGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 4215 0.79 0.052429
Target:  5'- gACGCGCGGCgGGUuacgcugagcgucAGCCGgGCCGCAg -3'
miRNA:   3'- -UGCGCGCCGgCCA-------------UUGGCgUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 26714 0.79 0.057264
Target:  5'- cGCGCGCaGGgCGGUGACgGCGCgGCGCc -3'
miRNA:   3'- -UGCGCG-CCgGCCAUUGgCGUGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 7127 0.76 0.092447
Target:  5'- cACGCGcCGGCUGGUGacACCGCAgccgacgaauCCGCAUc -3'
miRNA:   3'- -UGCGC-GCCGGCCAU--UGGCGU----------GGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 17673 0.76 0.095059
Target:  5'- cGCGaGCGGCCGG--GCCGCuucgcccaACCGCACg -3'
miRNA:   3'- -UGCgCGCCGGCCauUGGCG--------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 14269 0.75 0.10332
Target:  5'- gACGUGCGGCCaGGcugcuGCCGUcaagcGCCGCGCa -3'
miRNA:   3'- -UGCGCGCCGG-CCau---UGGCG-----UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 27370 0.75 0.10622
Target:  5'- aGCGCGUcuGGCUGGUGgaACgCGaCACCGCGCg -3'
miRNA:   3'- -UGCGCG--CCGGCCAU--UG-GC-GUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 39137 0.75 0.112252
Target:  5'- gGCGaCGUGGCgGG-GGCCGCAUCGCAUu -3'
miRNA:   3'- -UGC-GCGCCGgCCaUUGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 8664 0.74 0.128761
Target:  5'- gACGCGCGuggccuugggcGCCGGgguGCCGUccgccaacgucaGCCACACg -3'
miRNA:   3'- -UGCGCGC-----------CGGCCau-UGGCG------------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 21174 0.74 0.135973
Target:  5'- cUGCGaGGCCuGGUAcucGCCGCuCCACACg -3'
miRNA:   3'- uGCGCgCCGG-CCAU---UGGCGuGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 41457 0.73 0.140096
Target:  5'- gGCGCGCaaGGCUGGggcgcgggugaaguACCGCGCCAgCGCu -3'
miRNA:   3'- -UGCGCG--CCGGCCau------------UGGCGUGGU-GUG- -5'
11431 3' -60.1 NC_003085.1 + 9514 0.73 0.159886
Target:  5'- gGCGCGCGGCgGGUcaucGGCUcccugguaguGCACgACGCg -3'
miRNA:   3'- -UGCGCGCCGgCCA----UUGG----------CGUGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 509 0.73 0.159886
Target:  5'- gGCGCGCgGGCCGGaccggAugCGCGCUGCc- -3'
miRNA:   3'- -UGCGCG-CCGGCCa----UugGCGUGGUGug -5'
11431 3' -60.1 NC_003085.1 + 12027 0.72 0.172757
Target:  5'- gGCGCGgGGuuGGcgcucgcUAGCCGCACUgGCGCa -3'
miRNA:   3'- -UGCGCgCCggCC-------AUUGGCGUGG-UGUG- -5'
11431 3' -60.1 NC_003085.1 + 45228 0.72 0.172757
Target:  5'- aGCGCuGCGGcCCGGcugacgcucagcgUAACC-CGCCGCGCg -3'
miRNA:   3'- -UGCG-CGCC-GGCC-------------AUUGGcGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 19062 0.72 0.173216
Target:  5'- gGCGCGCGgcggagcaggcGCCGGgcccggacgGAgUGCGCCGCACc -3'
miRNA:   3'- -UGCGCGC-----------CGGCCa--------UUgGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 6367 0.72 0.177405
Target:  5'- gGCGUgcugcugGCGGCCGGUcguuucuuccucGGCCGUgucuCCACGCa -3'
miRNA:   3'- -UGCG-------CGCCGGCCA------------UUGGCGu---GGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 12290 0.72 0.187529
Target:  5'- cACGCGaCGGCgCGGUGGuCCGCuggguuGCgGCGCa -3'
miRNA:   3'- -UGCGC-GCCG-GCCAUU-GGCG------UGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 47875 0.71 0.192527
Target:  5'- cAUGCacaCGGCaCGcGUAcGCCGCGCCGCACu -3'
miRNA:   3'- -UGCGc--GCCG-GC-CAU-UGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 37835 0.71 0.192527
Target:  5'- cCGCGCGcGCUGGUAGCaGCcCCuGCACa -3'
miRNA:   3'- uGCGCGC-CGGCCAUUGgCGuGG-UGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.