miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11431 3' -60.1 NC_003085.1 + 40816 0.71 0.192527
Target:  5'- cGCGCGUcccGGCCGGc--CUGUACCugACg -3'
miRNA:   3'- -UGCGCG---CCGGCCauuGGCGUGGugUG- -5'
11431 3' -60.1 NC_003085.1 + 19702 0.71 0.192527
Target:  5'- gGCGCGCGG-CGGcauCUGCACCuucgaGCACg -3'
miRNA:   3'- -UGCGCGCCgGCCauuGGCGUGG-----UGUG- -5'
11431 3' -60.1 NC_003085.1 + 37835 0.71 0.192527
Target:  5'- cCGCGCGcGCUGGUAGCaGCcCCuGCACa -3'
miRNA:   3'- uGCGCGC-CGGCCAUUGgCGuGG-UGUG- -5'
11431 3' -60.1 NC_003085.1 + 1932 0.71 0.192527
Target:  5'- cGCuCGCGGgcucgucggucCCGGUGGCCGUAUCGCAg -3'
miRNA:   3'- -UGcGCGCC-----------GGCCAUUGGCGUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 47147 0.71 0.197641
Target:  5'- aGCG-GCGGCCGGUGgcgaggcagGCCaGCGCCGUGCu -3'
miRNA:   3'- -UGCgCGCCGGCCAU---------UGG-CGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 10150 0.71 0.197641
Target:  5'- cUGCGCGGCgGGgaguACCGCgaggACCGgGCg -3'
miRNA:   3'- uGCGCGCCGgCCau--UGGCG----UGGUgUG- -5'
11431 3' -60.1 NC_003085.1 + 15622 0.71 0.202873
Target:  5'- uACGUG-GGCCGGUGGCCGgGCgGagaGCg -3'
miRNA:   3'- -UGCGCgCCGGCCAUUGGCgUGgUg--UG- -5'
11431 3' -60.1 NC_003085.1 + 3557 0.7 0.225016
Target:  5'- cACGCucaagGCGGCCGGgcggcAAgCGCGCCuCGCu -3'
miRNA:   3'- -UGCG-----CGCCGGCCa----UUgGCGUGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 6700 0.7 0.230863
Target:  5'- gGCuuGCGGCCGcc--CUGCACCGCACc -3'
miRNA:   3'- -UGcgCGCCGGCcauuGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 14930 0.7 0.230863
Target:  5'- gGCGCucGCGGCCGcuGUGuugcugacGCUGuCGCCGCACg -3'
miRNA:   3'- -UGCG--CGCCGGC--CAU--------UGGC-GUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 3403 0.7 0.236838
Target:  5'- -aGCGCcgaagGGCgGGUGcaGCCGUAUCGCGCc -3'
miRNA:   3'- ugCGCG-----CCGgCCAU--UGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 31341 0.7 0.236838
Target:  5'- cCGCGCGGacguaCCGGUAGgC-CGCCAUGCg -3'
miRNA:   3'- uGCGCGCC-----GGCCAUUgGcGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 40798 0.7 0.242942
Target:  5'- cGCGCGCGGaCGGgcugaAACCGUGCUGCugGCg -3'
miRNA:   3'- -UGCGCGCCgGCCa----UUGGCGUGGUG--UG- -5'
11431 3' -60.1 NC_003085.1 + 23797 0.7 0.242942
Target:  5'- uCGUcCGGCCGGUAGUCGCAguCCGCAg -3'
miRNA:   3'- uGCGcGCCGGCCAUUGGCGU--GGUGUg -5'
11431 3' -60.1 NC_003085.1 + 5686 0.7 0.254259
Target:  5'- gACGC-UGGCCGGUGuugaguccaagcCCGCGCC-CACc -3'
miRNA:   3'- -UGCGcGCCGGCCAUu-----------GGCGUGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 6288 0.69 0.264678
Target:  5'- cCGCGCGG-CGGUGgagcgacuggagcagGCCGagcgggaACCGCGCa -3'
miRNA:   3'- uGCGCGCCgGCCAU---------------UGGCg------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 8223 0.69 0.268673
Target:  5'- cGCGCGUGGCguuGUAgagGCCGCACguCACc -3'
miRNA:   3'- -UGCGCGCCGgc-CAU---UGGCGUGguGUG- -5'
11431 3' -60.1 NC_003085.1 + 20984 0.69 0.268673
Target:  5'- uUGCGCGucagcacgcaGCCGGUGAgCGCcucaauCCACGCc -3'
miRNA:   3'- uGCGCGC----------CGGCCAUUgGCGu-----GGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 17299 0.69 0.268673
Target:  5'- gGCGCaGCcuGGCCGacgccGUAACC-CACCGCGCc -3'
miRNA:   3'- -UGCG-CG--CCGGC-----CAUUGGcGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 12422 0.69 0.268673
Target:  5'- aGCGCGguacaGGCCGGUGuCCGgguCGCCACu- -3'
miRNA:   3'- -UGCGCg----CCGGCCAUuGGC---GUGGUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.