miRNA display CGI


Results 21 - 40 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11431 3' -60.1 NC_003085.1 + 7127 0.76 0.092447
Target:  5'- cACGCGcCGGCUGGUGacACCGCAgccgacgaauCCGCAUc -3'
miRNA:   3'- -UGCGC-GCCGGCCAU--UGGCGU----------GGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 7987 0.67 0.384569
Target:  5'- -aGCGCuGGCgCGGUAcuucacCCGCGCCccagccuuGCGCg -3'
miRNA:   3'- ugCGCG-CCG-GCCAUu-----GGCGUGG--------UGUG- -5'
11431 3' -60.1 NC_003085.1 + 8223 0.69 0.268673
Target:  5'- cGCGCGUGGCguuGUAgagGCCGCACguCACc -3'
miRNA:   3'- -UGCGCGCCGgc-CAU---UGGCGUGguGUG- -5'
11431 3' -60.1 NC_003085.1 + 8664 0.74 0.128761
Target:  5'- gACGCGCGuggccuugggcGCCGGgguGCCGUccgccaacgucaGCCACACg -3'
miRNA:   3'- -UGCGCGC-----------CGGCCau-UGGCG------------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 8944 0.69 0.282343
Target:  5'- aGCGCGUGGCCaaccugcgcuGGgccaagGGCCGCgGCC-CGCg -3'
miRNA:   3'- -UGCGCGCCGG----------CCa-----UUGGCG-UGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 9514 0.73 0.159886
Target:  5'- gGCGCGCGGCgGGUcaucGGCUcccugguaguGCACgACGCg -3'
miRNA:   3'- -UGCGCGCCGgCCA----UUGG----------CGUGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 9810 0.66 0.411394
Target:  5'- cGCGCGCGccGCuCGGUGucgucgcgaaGuuGCGCCACu- -3'
miRNA:   3'- -UGCGCGC--CG-GCCAU----------UggCGUGGUGug -5'
11431 3' -60.1 NC_003085.1 + 10150 0.71 0.197641
Target:  5'- cUGCGCGGCgGGgaguACCGCgaggACCGgGCg -3'
miRNA:   3'- uGCGCGCCGgCCau--UGGCG----UGGUgUG- -5'
11431 3' -60.1 NC_003085.1 + 10470 0.67 0.384569
Target:  5'- gGCGCcccuCGGCUGGccgaccuGCUGCGCgGCGCa -3'
miRNA:   3'- -UGCGc---GCCGGCCau-----UGGCGUGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 10702 0.66 0.439348
Target:  5'- uGCGCGCGGCCcgcgaggcacuGGcUGACggcaagcggaCGCuguugcuguccgGCCACACg -3'
miRNA:   3'- -UGCGCGCCGG-----------CC-AUUG----------GCG------------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 10800 0.67 0.384569
Target:  5'- cGCGCaGCGGUgcgagUGGaAACgCGCACCGgGCa -3'
miRNA:   3'- -UGCG-CGCCG-----GCCaUUG-GCGUGGUgUG- -5'
11431 3' -60.1 NC_003085.1 + 11303 0.66 0.429909
Target:  5'- uGCGcCGCGGCgGGga---GCGCCAcCACc -3'
miRNA:   3'- -UGC-GCGCCGgCCauuggCGUGGU-GUG- -5'
11431 3' -60.1 NC_003085.1 + 11517 0.67 0.393381
Target:  5'- -gGUGUGGUgCGGUuACCG-GCCGCGCg -3'
miRNA:   3'- ugCGCGCCG-GCCAuUGGCgUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 11644 0.67 0.393381
Target:  5'- cGCGCGCGGa-GGgcAUUGCGCCGgGu -3'
miRNA:   3'- -UGCGCGCCggCCauUGGCGUGGUgUg -5'
11431 3' -60.1 NC_003085.1 + 11761 0.67 0.375888
Target:  5'- cACGCGUcuacgaCGGUAcgGCgGCGCCGCGCu -3'
miRNA:   3'- -UGCGCGccg---GCCAU--UGgCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 12027 0.72 0.172757
Target:  5'- gGCGCGgGGuuGGcgcucgcUAGCCGCACUgGCGCa -3'
miRNA:   3'- -UGCGCgCCggCC-------AUUGGCGUGG-UGUG- -5'
11431 3' -60.1 NC_003085.1 + 12237 0.68 0.303872
Target:  5'- aGCGCgGCGGCUGG--GCCGCcagaauugaagGCCGCugGCg -3'
miRNA:   3'- -UGCG-CGCCGGCCauUGGCG-----------UGGUG--UG- -5'
11431 3' -60.1 NC_003085.1 + 12290 0.72 0.187529
Target:  5'- cACGCGaCGGCgCGGUGGuCCGCuggguuGCgGCGCa -3'
miRNA:   3'- -UGCGC-GCCG-GCCAUU-GGCG------UGgUGUG- -5'
11431 3' -60.1 NC_003085.1 + 12422 0.69 0.268673
Target:  5'- aGCGCGguacaGGCCGGUGuCCGgguCGCCACu- -3'
miRNA:   3'- -UGCGCg----CCGGCCAUuGGC---GUGGUGug -5'
11431 3' -60.1 NC_003085.1 + 13576 0.66 0.402323
Target:  5'- cGCGCGUGGacgugggcaCCGG-AGgCGCGCCAUgACg -3'
miRNA:   3'- -UGCGCGCC---------GGCCaUUgGCGUGGUG-UG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.