miRNA display CGI


Results 1 - 20 of 109 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11431 3' -60.1 NC_003085.1 + 6704 0.66 0.448905
Target:  5'- cCGaCGCGGCgaUGGauGCCGUccACCGCGCc -3'
miRNA:   3'- uGC-GCGCCG--GCCauUGGCG--UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 34192 0.67 0.384569
Target:  5'- -gGCGCGGCgGGUGAgcUCG-GCCGCGg -3'
miRNA:   3'- ugCGCGCCGgCCAUU--GGCgUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 37130 0.67 0.361437
Target:  5'- cGCGUGCccuugcccagguucgGGUCGGUGugcGCCGCaacccagcggaccACCGCGCc -3'
miRNA:   3'- -UGCGCG---------------CCGGCCAU---UGGCG-------------UGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 37942 1.07 0.000372
Target:  5'- aACGCGCGGCCGGUAACCGCACCACACc -3'
miRNA:   3'- -UGCGCGCCGGCCAUUGGCGUGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 2725 0.66 0.429909
Target:  5'- uCGgGCGGCUGGcAGCgCGCGCgaagGCGCu -3'
miRNA:   3'- uGCgCGCCGGCCaUUG-GCGUGg---UGUG- -5'
11431 3' -60.1 NC_003085.1 + 25030 0.66 0.428971
Target:  5'- aGCGCGCGGuuGau-GCCGCcguagguGCC-CACc -3'
miRNA:   3'- -UGCGCGCCggCcauUGGCG-------UGGuGUG- -5'
11431 3' -60.1 NC_003085.1 + 26674 0.66 0.42059
Target:  5'- gGCGggaGCGGCCGuu-GCCGCuGCCGuCGCc -3'
miRNA:   3'- -UGCg--CGCCGGCcauUGGCG-UGGU-GUG- -5'
11431 3' -60.1 NC_003085.1 + 32998 0.66 0.419664
Target:  5'- gGCGCGCaGGUCGGacacuGCCGuCGCCucgaaugacgucgGCGCc -3'
miRNA:   3'- -UGCGCG-CCGGCCau---UGGC-GUGG-------------UGUG- -5'
11431 3' -60.1 NC_003085.1 + 26114 0.66 0.411394
Target:  5'- uGCGCcucgGCGGCCGG---CgGCGCUugGCc -3'
miRNA:   3'- -UGCG----CGCCGGCCauuGgCGUGGugUG- -5'
11431 3' -60.1 NC_003085.1 + 24128 0.67 0.384569
Target:  5'- aGCGCGCGccauccaccuuGUCGGUGGCC--ACCACGg -3'
miRNA:   3'- -UGCGCGC-----------CGGCCAUUGGcgUGGUGUg -5'
11431 3' -60.1 NC_003085.1 + 40077 0.67 0.396943
Target:  5'- cCGCGCuGGCCGGUAcucaagcaGCCcuuccuugucggccuGCGuCCACAg -3'
miRNA:   3'- uGCGCG-CCGGCCAU--------UGG---------------CGU-GGUGUg -5'
11431 3' -60.1 NC_003085.1 + 9810 0.66 0.411394
Target:  5'- cGCGCGCGccGCuCGGUGucgucgcgaaGuuGCGCCACu- -3'
miRNA:   3'- -UGCGCGC--CG-GCCAU----------UggCGUGGUGug -5'
11431 3' -60.1 NC_003085.1 + 25572 0.66 0.448905
Target:  5'- uGCGCGUGGaCGGcugcuGCCGUucGCuCACGCc -3'
miRNA:   3'- -UGCGCGCCgGCCau---UGGCG--UG-GUGUG- -5'
11431 3' -60.1 NC_003085.1 + 35881 0.67 0.393381
Target:  5'- gGCGCGCcuCCGGUGcCCaCGuCCACGCg -3'
miRNA:   3'- -UGCGCGccGGCCAUuGGcGU-GGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 21334 0.66 0.439348
Target:  5'- -aGCGuCGGCCGcagcAACUGCACCugcuucugGCGCg -3'
miRNA:   3'- ugCGC-GCCGGCca--UUGGCGUGG--------UGUG- -5'
11431 3' -60.1 NC_003085.1 + 48872 0.66 0.415057
Target:  5'- gGCGCcagucgagacacccuGCGGCgGG-GGCCGCcCUGCACu -3'
miRNA:   3'- -UGCG---------------CGCCGgCCaUUGGCGuGGUGUG- -5'
11431 3' -60.1 NC_003085.1 + 5894 0.67 0.393381
Target:  5'- -gGCGCcgGGUCGGUGACgCGgGCCuaucuCGCg -3'
miRNA:   3'- ugCGCG--CCGGCCAUUG-GCgUGGu----GUG- -5'
11431 3' -60.1 NC_003085.1 + 7987 0.67 0.384569
Target:  5'- -aGCGCuGGCgCGGUAcuucacCCGCGCCccagccuuGCGCg -3'
miRNA:   3'- ugCGCG-CCG-GCCAUu-----GGCGUGG--------UGUG- -5'
11431 3' -60.1 NC_003085.1 + 11303 0.66 0.429909
Target:  5'- uGCGcCGCGGCgGGga---GCGCCAcCACc -3'
miRNA:   3'- -UGC-GCGCCGgCCauuggCGUGGU-GUG- -5'
11431 3' -60.1 NC_003085.1 + 26218 0.66 0.428971
Target:  5'- cGCGgGCGGCgCGGUGcgaagcgcggcgGCCGUcuggagcagcccgGCCACu- -3'
miRNA:   3'- -UGCgCGCCG-GCCAU------------UGGCG-------------UGGUGug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.