miRNA display CGI


Results 41 - 60 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 3230 0.66 0.265352
Target:  5'- uGCCGGCGCuaCCuGGGC-CGGC-CCa -3'
miRNA:   3'- uCGGCUGUGcgGGcCUCGcGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 17824 0.66 0.264715
Target:  5'- cGCCugugcGGCAgGCCCcuGGGGCagugcuggugcccGCaGGCGCCg -3'
miRNA:   3'- uCGG-----CUGUgCGGG--CCUCG-------------CG-CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 29375 0.66 0.259033
Target:  5'- cGcCCGGCagaACGCCauggCGGAGuUGCuGCGCCa -3'
miRNA:   3'- uC-GGCUG---UGCGG----GCCUC-GCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13098 0.66 0.259033
Target:  5'- -aCUGGCACGCCgCGcugaggugcguGAGCGCGG-GCUc -3'
miRNA:   3'- ucGGCUGUGCGG-GC-----------CUCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 2467 0.66 0.259033
Target:  5'- cAGCCacuGACGCauagugugGCCaucAGCGCGGCGCUu -3'
miRNA:   3'- -UCGG---CUGUG--------CGGgccUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 20049 0.66 0.255301
Target:  5'- cGCCGccCGCGCCCuccuGGAGCGggacauccgcuuccaCGcGCGCUg -3'
miRNA:   3'- uCGGCu-GUGCGGG----CCUCGC---------------GC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 34544 0.66 0.246764
Target:  5'- cGGCCGcgaGCGCcaccagCCGGccCGCGuGCGCCg -3'
miRNA:   3'- -UCGGCug-UGCG------GGCCucGCGC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 32173 0.66 0.246764
Target:  5'- cGGCCaGGCuGCGCCaguGGuGGCGCGcGUGCUu -3'
miRNA:   3'- -UCGG-CUG-UGCGGg--CC-UCGCGC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 22861 0.66 0.257162
Target:  5'- gAGuCCGGCAgCGCCCacaggugguaccgaGGAGCcUGGUGCg -3'
miRNA:   3'- -UC-GGCUGU-GCGGG--------------CCUCGcGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 32219 0.67 0.229267
Target:  5'- cGCa-ACAcCGCCCaGAGCacGgGGCGCCg -3'
miRNA:   3'- uCGgcUGU-GCGGGcCUCG--CgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 10617 0.67 0.229267
Target:  5'- uGGCCaauGCACcUCCGGcuguGUGgGGCGCCg -3'
miRNA:   3'- -UCGGc--UGUGcGGGCCu---CGCgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28520 0.67 0.223672
Target:  5'- cGGUgGACGCGUCaGGGcgaaucCGCGGCGUCg -3'
miRNA:   3'- -UCGgCUGUGCGGgCCUc-----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 497 0.67 0.223672
Target:  5'- aGGCUGAgggccUGCGUuuGGAGC-CGGUGUCu -3'
miRNA:   3'- -UCGGCU-----GUGCGggCCUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 15065 0.67 0.218194
Target:  5'- aAGCCucguggGAgUugGCCCuggaGGAGgGaCGGCGCCu -3'
miRNA:   3'- -UCGG------CU-GugCGGG----CCUCgC-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13914 0.67 0.218194
Target:  5'- cGGCguGCGCGCguuucggaCGGGGCGCG-CGCCg -3'
miRNA:   3'- -UCGgcUGUGCGg-------GCCUCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 42048 0.67 0.21283
Target:  5'- cAGCCGgguaGCAgucCGCgCGGAGCGgGGUgaagacgauGCCg -3'
miRNA:   3'- -UCGGC----UGU---GCGgGCCUCGCgCCG---------CGG- -5'
11432 3' -64.9 NC_003085.1 + 20821 0.67 0.21283
Target:  5'- gGGUgGACGCcauCCUGGAugagGCGacCGGCGCCg -3'
miRNA:   3'- -UCGgCUGUGc--GGGCCU----CGC--GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 44252 0.67 0.23498
Target:  5'- gGGCCGcguCGCGCUCGGA-CuCGGCcuGCCu -3'
miRNA:   3'- -UCGGCu--GUGCGGGCCUcGcGCCG--CGG- -5'
11432 3' -64.9 NC_003085.1 + 432 0.67 0.240812
Target:  5'- cGGCCGcgucuacgagucACACGgCgCGGAGgGCcagccGGCGCUg -3'
miRNA:   3'- -UCGGC------------UGUGCgG-GCCUCgCG-----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 3421 0.67 0.229267
Target:  5'- cAGCCGuauCGCGCCUgcuGGAGaacuucgaGCaGGCGaCCa -3'
miRNA:   3'- -UCGGCu--GUGCGGG---CCUCg-------CG-CCGC-GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.