Results 21 - 40 of 186 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11432 | 3' | -64.9 | NC_003085.1 | + | 641 | 0.66 | 0.278365 |
Target: 5'- cGCCaAgGCGCUCGGcGCGaaagaGGUGCUg -3' miRNA: 3'- uCGGcUgUGCGGGCCuCGCg----CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 45909 | 0.66 | 0.265352 |
Target: 5'- cGcCCGGC-CGCCUuGAGCGUGGU-CCa -3' miRNA: 3'- uC-GGCUGuGCGGGcCUCGCGCCGcGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 9170 | 0.66 | 0.271796 |
Target: 5'- aGGgCGACGCuGCCCaG-GC-CGGCGCa -3' miRNA: 3'- -UCgGCUGUG-CGGGcCuCGcGCCGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 10654 | 0.66 | 0.271796 |
Target: 5'- uGCUcACACGCCUGGcugAGCGaCaGCGCa -3' miRNA: 3'- uCGGcUGUGCGGGCC---UCGC-GcCGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 3230 | 0.66 | 0.265352 |
Target: 5'- uGCCGGCGCuaCCuGGGC-CGGC-CCa -3' miRNA: 3'- uCGGCUGUGcgGGcCUCGcGCCGcGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 3933 | 0.66 | 0.265352 |
Target: 5'- aAGCCGA-GCGCCgCGGcgauguuGuCGCGGC-CCg -3' miRNA: 3'- -UCGGCUgUGCGG-GCCu------C-GCGCCGcGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 16531 | 0.66 | 0.265352 |
Target: 5'- -aCCGACACccuuuGCCCGaagugcagcGAcuccaacuGCGUGGCGCCc -3' miRNA: 3'- ucGGCUGUG-----CGGGC---------CU--------CGCGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 11036 | 0.66 | 0.265352 |
Target: 5'- cGCCGAgaCAgGCCCGGAcuuGUGaCGG-GCUa -3' miRNA: 3'- uCGGCU--GUgCGGGCCU---CGC-GCCgCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 12598 | 0.66 | 0.265352 |
Target: 5'- uGGuCCGACugACGCgCGuGGCGCcccgGGCGCUg -3' miRNA: 3'- -UC-GGCUG--UGCGgGCcUCGCG----CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 19687 | 0.66 | 0.265352 |
Target: 5'- -cCUGGCG-GCCCuGGAggcGCGCGGCGgCa -3' miRNA: 3'- ucGGCUGUgCGGG-CCU---CGCGCCGCgG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 21498 | 0.66 | 0.271796 |
Target: 5'- uGGUgGACugGuuCCCcuuGGAGCccgucgucGCGGCGCUg -3' miRNA: 3'- -UCGgCUGugC--GGG---CCUCG--------CGCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 48362 | 0.66 | 0.277702 |
Target: 5'- -uCCGagugacucacGCGCGCuCCuGAGCGCGGCgagcagcGCCg -3' miRNA: 3'- ucGGC----------UGUGCG-GGcCUCGCGCCG-------CGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 33094 | 0.66 | 0.265352 |
Target: 5'- uGCC--CGCGCCUGGAauGCcuCGGUGCCc -3' miRNA: 3'- uCGGcuGUGCGGGCCU--CGc-GCCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 16338 | 0.66 | 0.278365 |
Target: 5'- gAGCCuGCgGCGCUagGGAGCGUucgacaGCGCCa -3' miRNA: 3'- -UCGGcUG-UGCGGg-CCUCGCGc-----CGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 14962 | 0.66 | 0.264715 |
Target: 5'- cGCCG-CACgGUCCGuGGUGCccugggaGGCGCCc -3' miRNA: 3'- uCGGCuGUG-CGGGCcUCGCG-------CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 5518 | 0.66 | 0.277702 |
Target: 5'- cGUCGGCACGUgcucgcaCUGGuGCGCGaaguGCGCg -3' miRNA: 3'- uCGGCUGUGCG-------GGCCuCGCGC----CGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 39664 | 0.66 | 0.265352 |
Target: 5'- gAG-CGGCGCGCgCGuGAGCaGCagcaGGCGCUg -3' miRNA: 3'- -UCgGCUGUGCGgGC-CUCG-CG----CCGCGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 1494 | 0.66 | 0.265352 |
Target: 5'- uGCuCGACGCgGCCCGuccGGCGCucgggcaagaGGCaGCCg -3' miRNA: 3'- uCG-GCUGUG-CGGGCc--UCGCG----------CCG-CGG- -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 30615 | 0.66 | 0.259033 |
Target: 5'- uGGCCGaACACGaaCUucAGCGCGGCGUa -3' miRNA: 3'- -UCGGC-UGUGCg-GGccUCGCGCCGCGg -5' |
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11432 | 3' | -64.9 | NC_003085.1 | + | 17824 | 0.66 | 0.264715 |
Target: 5'- cGCCugugcGGCAgGCCCcuGGGGCagugcuggugcccGCaGGCGCCg -3' miRNA: 3'- uCGG-----CUGUgCGGG--CCUCG-------------CG-CCGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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