miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 12598 0.66 0.265352
Target:  5'- uGGuCCGACugACGCgCGuGGCGCcccgGGCGCUg -3'
miRNA:   3'- -UC-GGCUG--UGCGgGCcUCGCG----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 11036 0.66 0.265352
Target:  5'- cGCCGAgaCAgGCCCGGAcuuGUGaCGG-GCUa -3'
miRNA:   3'- uCGGCU--GUgCGGGCCU---CGC-GCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 3933 0.66 0.265352
Target:  5'- aAGCCGA-GCGCCgCGGcgauguuGuCGCGGC-CCg -3'
miRNA:   3'- -UCGGCUgUGCGG-GCCu------C-GCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 32173 0.66 0.246764
Target:  5'- cGGCCaGGCuGCGCCaguGGuGGCGCGcGUGCUu -3'
miRNA:   3'- -UCGG-CUG-UGCGGg--CC-UCGCGC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 29182 0.66 0.246764
Target:  5'- cGCaguGGCAgCGCCgcgaggacgCGGAGCGCacGCGCCu -3'
miRNA:   3'- uCGg--CUGU-GCGG---------GCCUCGCGc-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 3230 0.66 0.265352
Target:  5'- uGCCGGCGCuaCCuGGGC-CGGC-CCa -3'
miRNA:   3'- uCGGCUGUGcgGGcCUCGcGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 17824 0.66 0.264715
Target:  5'- cGCCugugcGGCAgGCCCcuGGGGCagugcuggugcccGCaGGCGCCg -3'
miRNA:   3'- uCGG-----CUGUgCGGG--CCUCG-------------CG-CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 2467 0.66 0.259033
Target:  5'- cAGCCacuGACGCauagugugGCCaucAGCGCGGCGCUu -3'
miRNA:   3'- -UCGG---CUGUG--------CGGgccUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 29375 0.66 0.259033
Target:  5'- cGcCCGGCagaACGCCauggCGGAGuUGCuGCGCCa -3'
miRNA:   3'- uC-GGCUG---UGCGG----GCCUC-GCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 7251 0.66 0.246764
Target:  5'- cAGCCcgggGACAgGCUCugggugaaGGAGaCGUGGCGCa -3'
miRNA:   3'- -UCGG----CUGUgCGGG--------CCUC-GCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 22861 0.66 0.257162
Target:  5'- gAGuCCGGCAgCGCCCacaggugguaccgaGGAGCcUGGUGCg -3'
miRNA:   3'- -UC-GGCUGU-GCGGG--------------CCUCGcGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 13098 0.66 0.259033
Target:  5'- -aCUGGCACGCCgCGcugaggugcguGAGCGCGG-GCUc -3'
miRNA:   3'- ucGGCUGUGCGG-GC-----------CUCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 45357 0.66 0.252837
Target:  5'- uGGCUGGCA-GCCUGGAccGCcCGGC-CCa -3'
miRNA:   3'- -UCGGCUGUgCGGGCCU--CGcGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 48593 0.66 0.246163
Target:  5'- cGCC-AC-CGCCgGGAagGCGCgagcgaugcgcuuGGCGCCg -3'
miRNA:   3'- uCGGcUGuGCGGgCCU--CGCG-------------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 34544 0.66 0.246764
Target:  5'- cGGCCGcgaGCGCcaccagCCGGccCGCGuGCGCCg -3'
miRNA:   3'- -UCGGCug-UGCG------GGCCucGCGC-CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 16531 0.66 0.265352
Target:  5'- -aCCGACACccuuuGCCCGaagugcagcGAcuccaacuGCGUGGCGCCc -3'
miRNA:   3'- ucGGCUGUG-----CGGGC---------CU--------CGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 9690 0.66 0.252837
Target:  5'- -aCCGGCugGCgucccugcagaCUGGAGCGCcGGaaCGCCu -3'
miRNA:   3'- ucGGCUGugCG-----------GGCCUCGCG-CC--GCGG- -5'
11432 3' -64.9 NC_003085.1 + 19687 0.66 0.265352
Target:  5'- -cCUGGCG-GCCCuGGAggcGCGCGGCGgCa -3'
miRNA:   3'- ucGGCUGUgCGGG-CCU---CGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 47970 0.66 0.249179
Target:  5'- cGCCgGACGgGCCgcgucgagcaagucgCGGAGggaggaCGCGGCGCa -3'
miRNA:   3'- uCGG-CUGUgCGG---------------GCCUC------GCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 20049 0.66 0.255301
Target:  5'- cGCCGccCGCGCCCuccuGGAGCGggacauccgcuuccaCGcGCGCUg -3'
miRNA:   3'- uCGGCu-GUGCGGG----CCUCGC---------------GC-CGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.