miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 28142 0.71 0.120828
Target:  5'- cGGCCGACGCuGCUCucugaGAGUGCGaCGCCc -3'
miRNA:   3'- -UCGGCUGUG-CGGGc----CUCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 46677 0.72 0.090139
Target:  5'- cGCCG-C-CGCCUGGAGCGC--CGCCg -3'
miRNA:   3'- uCGGCuGuGCGGGCCUCGCGccGCGG- -5'
11432 3' -64.9 NC_003085.1 + 26711 0.72 0.097686
Target:  5'- gAGC--GCGCGCagggCGGugacGGCGCGGCGCCg -3'
miRNA:   3'- -UCGgcUGUGCGg---GCC----UCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 22761 0.72 0.097686
Target:  5'- cGCCGACgACGCCCGc--CGCGGUGgCg -3'
miRNA:   3'- uCGGCUG-UGCGGGCcucGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 15286 0.72 0.100332
Target:  5'- cGCCGcgcccgcgucauGCugGCCCGGGGCGuCGaGC-CCa -3'
miRNA:   3'- uCGGC------------UGugCGGGCCUCGC-GC-CGcGG- -5'
11432 3' -64.9 NC_003085.1 + 30338 0.72 0.103045
Target:  5'- uGGCgGACGCuGUCgCGGGGCGCacugcGGCGUCu -3'
miRNA:   3'- -UCGgCUGUG-CGG-GCCUCGCG-----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 678 0.71 0.117677
Target:  5'- cGCCGGCcaccugucccGCGUCCGGccucgGGCGCGGC-CUg -3'
miRNA:   3'- uCGGCUG----------UGCGGGCC-----UCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 10479 0.71 0.117677
Target:  5'- cGGCUGGC-CGaCCUGcuGCGCGGCGCa -3'
miRNA:   3'- -UCGGCUGuGC-GGGCcuCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 11631 0.71 0.120828
Target:  5'- gGGCUGcuaccaGCGCGCgCGGAGgGCauuGCGCCg -3'
miRNA:   3'- -UCGGC------UGUGCGgGCCUCgCGc--CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 26575 0.72 0.090139
Target:  5'- cGCCGACGCa-CCGGAGUcCGGCGgCg -3'
miRNA:   3'- uCGGCUGUGcgGGCCUCGcGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 47534 0.73 0.087748
Target:  5'- gGGaCCGACGaGCCCGcGAGCGauGCGCa -3'
miRNA:   3'- -UC-GGCUGUgCGGGC-CUCGCgcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 47713 0.73 0.085418
Target:  5'- cGUCGACugcuGCGCCUGcugacGGGCGCGGUGCg -3'
miRNA:   3'- uCGGCUG----UGCGGGC-----CUCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 5152 0.76 0.045263
Target:  5'- aGGCCGACGCGaaggcagcggccauCCUGGcgcggaaggcAGgGCGGCGCCg -3'
miRNA:   3'- -UCGGCUGUGC--------------GGGCC----------UCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28598 0.75 0.055305
Target:  5'- cGGUgGACACGCCgGuGGUGUGGCGCUc -3'
miRNA:   3'- -UCGgCUGUGCGGgCcUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 31970 0.74 0.068606
Target:  5'- gGGCUGGCgacugcccccguuACGCCUGGGGC-UGGCGCUg -3'
miRNA:   3'- -UCGGCUG-------------UGCGGGCCUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 41452 0.74 0.068793
Target:  5'- gAGuuGGCGCGCaaggCUGGGGCGCGggugaaguaccGCGCCa -3'
miRNA:   3'- -UCggCUGUGCG----GGCCUCGCGC-----------CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 6019 0.74 0.070687
Target:  5'- cGCgGAUguACGCCCGGA-CGCcGCGCCa -3'
miRNA:   3'- uCGgCUG--UGCGGGCCUcGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 15177 0.74 0.073423
Target:  5'- cGCUGACG-GCCCGGcugagccggugcgccAGCGCcGCGCCg -3'
miRNA:   3'- uCGGCUGUgCGGGCC---------------UCGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 11533 0.73 0.083147
Target:  5'- cGGCCG-CGCGUUCGucGAGCGCcGGgGCCa -3'
miRNA:   3'- -UCGGCuGUGCGGGC--CUCGCG-CCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 37021 0.73 0.084731
Target:  5'- cGCUGACcuucagugGCGaCCCGGAcaccggccuguaccGCGCuGGCGCCg -3'
miRNA:   3'- uCGGCUG--------UGC-GGGCCU--------------CGCG-CCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.