miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 432 0.67 0.240812
Target:  5'- cGGCCGcgucuacgagucACACGgCgCGGAGgGCcagccGGCGCUg -3'
miRNA:   3'- -UCGGC------------UGUGCgG-GCCUCgCG-----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 497 0.67 0.223672
Target:  5'- aGGCUGAgggccUGCGUuuGGAGC-CGGUGUCu -3'
miRNA:   3'- -UCGGCU-----GUGCGggCCUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 641 0.66 0.278365
Target:  5'- cGCCaAgGCGCUCGGcGCGaaagaGGUGCUg -3'
miRNA:   3'- uCGGcUgUGCGGGCCuCGCg----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 678 0.71 0.117677
Target:  5'- cGCCGGCcaccugucccGCGUCCGGccucgGGCGCGGC-CUg -3'
miRNA:   3'- uCGGCUG----------UGCGGGCC-----UCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 692 0.73 0.080934
Target:  5'- cGCCGcCAguCGCCaCGGGgcaacuccGCGUGGCGCCu -3'
miRNA:   3'- uCGGCuGU--GCGG-GCCU--------CGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 828 0.67 0.218194
Target:  5'- cGGCCuGugGCGCaaGGugaaGGCauaCGGCGCCa -3'
miRNA:   3'- -UCGG-CugUGCGggCC----UCGc--GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 1087 0.66 0.246764
Target:  5'- uGCuCGcCGCGCUCaGGAGCGC-GCGUg -3'
miRNA:   3'- uCG-GCuGUGCGGG-CCUCGCGcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 1280 0.66 0.252837
Target:  5'- gGGCCaccucguGCGCGCCgaaauccucaagCGuGAGCGCGaCGCCg -3'
miRNA:   3'- -UCGGc------UGUGCGG------------GC-CUCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 1494 0.66 0.265352
Target:  5'- uGCuCGACGCgGCCCGuccGGCGCucgggcaagaGGCaGCCg -3'
miRNA:   3'- uCG-GCUGUG-CGGGCc--UCGCG----------CCG-CGG- -5'
11432 3' -64.9 NC_003085.1 + 1559 0.69 0.161003
Target:  5'- aGGCCGugcGCGuCGCCUGcaguugcGGCGCGGCGUa -3'
miRNA:   3'- -UCGGC---UGU-GCGGGCc------UCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 1686 0.68 0.202443
Target:  5'- uGGCCGAagcacaaguCGCCUGcGAGCGCcuGGcCGUCg -3'
miRNA:   3'- -UCGGCUgu-------GCGGGC-CUCGCG--CC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 2096 0.67 0.21283
Target:  5'- cAGCCGccGCAC-CUCGGcGCcauCGGCGCCc -3'
miRNA:   3'- -UCGGC--UGUGcGGGCCuCGc--GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 2467 0.66 0.259033
Target:  5'- cAGCCacuGACGCauagugugGCCaucAGCGCGGCGCUu -3'
miRNA:   3'- -UCGG---CUGUG--------CGGgccUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 3230 0.66 0.265352
Target:  5'- uGCCGGCGCuaCCuGGGC-CGGC-CCa -3'
miRNA:   3'- uCGGCUGUGcgGGcCUCGcGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 3421 0.67 0.229267
Target:  5'- cAGCCGuauCGCGCCUgcuGGAGaacuucgaGCaGGCGaCCa -3'
miRNA:   3'- -UCGGCu--GUGCGGG---CCUCg-------CG-CCGC-GG- -5'
11432 3' -64.9 NC_003085.1 + 3790 0.66 0.246764
Target:  5'- cGGCUGACggACGCCgaaGcGGCGaCGGUGCUg -3'
miRNA:   3'- -UCGGCUG--UGCGGg--CcUCGC-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 3919 0.66 0.259033
Target:  5'- gAGuuGACACGCCaGGcucgcGuCGCGG-GCCu -3'
miRNA:   3'- -UCggCUGUGCGGgCCu----C-GCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 3933 0.66 0.265352
Target:  5'- aAGCCGA-GCGCCgCGGcgauguuGuCGCGGC-CCg -3'
miRNA:   3'- -UCGGCUgUGCGG-GCCu------C-GCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 4401 0.69 0.148983
Target:  5'- -uCCGGCACGCUgGGcGCGCaucuacuccGGUGCCc -3'
miRNA:   3'- ucGGCUGUGCGGgCCuCGCG---------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 5027 0.71 0.124056
Target:  5'- aAGaCGACgACGCCCgaGGAG-GUGGCGCUg -3'
miRNA:   3'- -UCgGCUG-UGCGGG--CCUCgCGCCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.