miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 37678 1.11 0.000087
Target:  5'- cAGCCGACACGCCCGGAGCGCGGCGCCg -3'
miRNA:   3'- -UCGGCUGUGCGGGCCUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 24206 0.81 0.020426
Target:  5'- cGCCGACGacgacgccCGCCgCGGAGCgcaccaggGCGGCGCCg -3'
miRNA:   3'- uCGGCUGU--------GCGG-GCCUCG--------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 36431 0.78 0.032765
Target:  5'- gAGCCGGgacuCAcCGUgCGGAGgGCGGCGCCu -3'
miRNA:   3'- -UCGGCU----GU-GCGgGCCUCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 5152 0.76 0.045263
Target:  5'- aGGCCGACGCGaaggcagcggccauCCUGGcgcggaaggcAGgGCGGCGCCg -3'
miRNA:   3'- -UCGGCUGUGC--------------GGGCC----------UCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28598 0.75 0.055305
Target:  5'- cGGUgGACACGCCgGuGGUGUGGCGCUc -3'
miRNA:   3'- -UCGgCUGUGCGGgCcUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 49049 0.75 0.056839
Target:  5'- cGGCCGAgacugGCGUCCagGGAGCGCaGGCGCUu -3'
miRNA:   3'- -UCGGCUg----UGCGGG--CCUCGCG-CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 48801 0.75 0.058415
Target:  5'- uGGCCGGCgACGUCCGGgcGGUGCucgaGCGCCu -3'
miRNA:   3'- -UCGGCUG-UGCGGGCC--UCGCGc---CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 26124 0.74 0.06515
Target:  5'- cGGCCGGCgGCGCuuGGccGGCcagaGCGGCGUCa -3'
miRNA:   3'- -UCGGCUG-UGCGggCC--UCG----CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 27071 0.74 0.06515
Target:  5'- -cUCGACGCGCCCcgucucgggguuGGGGCgguacacguaGCGGCGCCu -3'
miRNA:   3'- ucGGCUGUGCGGG------------CCUCG----------CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 12332 0.74 0.066948
Target:  5'- cGCCGuCGCcguGCCCGGcGUGaCGGUGCCa -3'
miRNA:   3'- uCGGCuGUG---CGGGCCuCGC-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 31970 0.74 0.068606
Target:  5'- gGGCUGGCgacugcccccguuACGCCUGGGGC-UGGCGCUg -3'
miRNA:   3'- -UCGGCUG-------------UGCGGGCCUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 41452 0.74 0.068793
Target:  5'- gAGuuGGCGCGCaaggCUGGGGCGCGggugaaguaccGCGCCa -3'
miRNA:   3'- -UCggCUGUGCG----GGCCUCGCGC-----------CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 6019 0.74 0.070687
Target:  5'- cGCgGAUguACGCCCGGA-CGCcGCGCCa -3'
miRNA:   3'- uCGgCUG--UGCGGGCCUcGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 12464 0.74 0.072435
Target:  5'- cGCUGGgGCGCCagcagugcccugcUGGAGUcgaaGCGGCGCCa -3'
miRNA:   3'- uCGGCUgUGCGG-------------GCCUCG----CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 15177 0.74 0.073423
Target:  5'- cGCUGACG-GCCCGGcugagccggugcgccAGCGCcGCGCCg -3'
miRNA:   3'- uCGGCUGUgCGGGCC---------------UCGCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 692 0.73 0.080934
Target:  5'- cGCCGcCAguCGCCaCGGGgcaacuccGCGUGGCGCCu -3'
miRNA:   3'- uCGGCuGU--GCGG-GCCU--------CGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 11533 0.73 0.083147
Target:  5'- cGGCCG-CGCGUUCGucGAGCGCcGGgGCCa -3'
miRNA:   3'- -UCGGCuGUGCGGGC--CUCGCG-CCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 37021 0.73 0.084731
Target:  5'- cGCUGACcuucagugGCGaCCCGGAcaccggccuguaccGCGCuGGCGCCg -3'
miRNA:   3'- uCGGCUG--------UGC-GGGCCU--------------CGCG-CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 47713 0.73 0.085418
Target:  5'- cGUCGACugcuGCGCCUGcugacGGGCGCGGUGCg -3'
miRNA:   3'- uCGGCUG----UGCGGGC-----CUCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 47534 0.73 0.087748
Target:  5'- gGGaCCGACGaGCCCGcGAGCGauGCGCa -3'
miRNA:   3'- -UC-GGCUGUgCGGGC-CUCGCgcCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.