miRNA display CGI


Results 21 - 40 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 46677 0.72 0.090139
Target:  5'- cGCCG-C-CGCCUGGAGCGC--CGCCg -3'
miRNA:   3'- uCGGCuGuGCGGGCCUCGCGccGCGG- -5'
11432 3' -64.9 NC_003085.1 + 26575 0.72 0.090139
Target:  5'- cGCCGACGCa-CCGGAGUcCGGCGgCg -3'
miRNA:   3'- uCGGCUGUGcgGGCCUCGcGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 34162 0.72 0.094345
Target:  5'- gGGCuCGACGC-CCCGGgccagcaugacgcgGGCGCGGCGg- -3'
miRNA:   3'- -UCG-GCUGUGcGGGCC--------------UCGCGCCGCgg -5'
11432 3' -64.9 NC_003085.1 + 5888 0.72 0.095106
Target:  5'- uGCCGugGCGCCgGGucgguGaCGCGG-GCCu -3'
miRNA:   3'- uCGGCugUGCGGgCCu----C-GCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 22761 0.72 0.097686
Target:  5'- cGCCGACgACGCCCGc--CGCGGUGgCg -3'
miRNA:   3'- uCGGCUG-UGCGGGCcucGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 26711 0.72 0.097686
Target:  5'- gAGC--GCGCGCagggCGGugacGGCGCGGCGCCg -3'
miRNA:   3'- -UCGgcUGUGCGg---GCC----UCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 8796 0.72 0.097686
Target:  5'- cGCCGGCGgcucCGCgaGGuuGCGCGGCGCa -3'
miRNA:   3'- uCGGCUGU----GCGggCCu-CGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 15286 0.72 0.100332
Target:  5'- cGCCGcgcccgcgucauGCugGCCCGGGGCGuCGaGC-CCa -3'
miRNA:   3'- uCGGC------------UGugCGGGCCUCGC-GC-CGcGG- -5'
11432 3' -64.9 NC_003085.1 + 30338 0.72 0.103045
Target:  5'- uGGCgGACGCuGUCgCGGGGCGCacugcGGCGUCu -3'
miRNA:   3'- -UCGgCUGUG-CGG-GCCUCGCG-----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 24102 0.71 0.111605
Target:  5'- cGUCGGCGugcccgucacCGUCCGGaAGCGCG-CGCCa -3'
miRNA:   3'- uCGGCUGU----------GCGGGCC-UCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 16521 0.71 0.111605
Target:  5'- uGGCaGGCGCGCCUGuuGAGC-CGGuCGCCg -3'
miRNA:   3'- -UCGgCUGUGCGGGC--CUCGcGCC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 678 0.71 0.117677
Target:  5'- cGCCGGCcaccugucccGCGUCCGGccucgGGCGCGGC-CUg -3'
miRNA:   3'- uCGGCUG----------UGCGGGCC-----UCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 10479 0.71 0.117677
Target:  5'- cGGCUGGC-CGaCCUGcuGCGCGGCGCa -3'
miRNA:   3'- -UCGGCUGuGC-GGGCcuCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 45478 0.71 0.117677
Target:  5'- uGCCGuguCGCGCUCGacaAGCGCGGcCGUCu -3'
miRNA:   3'- uCGGCu--GUGCGGGCc--UCGCGCC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 11631 0.71 0.120828
Target:  5'- gGGCUGcuaccaGCGCGCgCGGAGgGCauuGCGCCg -3'
miRNA:   3'- -UCGGC------UGUGCGgGCCUCgCGc--CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 20598 0.71 0.120828
Target:  5'- uGCuCGGCAgCGCCgCGGAagucGgGCGGCGCg -3'
miRNA:   3'- uCG-GCUGU-GCGG-GCCU----CgCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 42347 0.71 0.120828
Target:  5'- cAGCCGGCGCGUgaccgucuuCCGGccGGCGaggauGGCGCUc -3'
miRNA:   3'- -UCGGCUGUGCG---------GGCC--UCGCg----CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28142 0.71 0.120828
Target:  5'- cGGCCGACGCuGCUCucugaGAGUGCGaCGCCc -3'
miRNA:   3'- -UCGGCUGUG-CGGGc----CUCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 5027 0.71 0.124056
Target:  5'- aAGaCGACgACGCCCgaGGAG-GUGGCGCUg -3'
miRNA:   3'- -UCgGCUG-UGCGGG--CCUCgCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 8657 0.7 0.127365
Target:  5'- cGGCCggGACGCGCgUGGccuugGGCGCcggGGUGCCg -3'
miRNA:   3'- -UCGG--CUGUGCGgGCC-----UCGCG---CCGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.