miRNA display CGI


Results 1 - 20 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 49049 0.75 0.056839
Target:  5'- cGGCCGAgacugGCGUCCagGGAGCGCaGGCGCUu -3'
miRNA:   3'- -UCGGCUg----UGCGGG--CCUCGCG-CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 49012 0.66 0.259033
Target:  5'- cGCCGGCugGCCCuccGCGCcGUGUg -3'
miRNA:   3'- uCGGCUGugCGGGccuCGCGcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 48850 0.7 0.145161
Target:  5'- cAGCCucgaGCGCGCCCaGGA---CGGCGCCa -3'
miRNA:   3'- -UCGGc---UGUGCGGG-CCUcgcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 48801 0.75 0.058415
Target:  5'- uGGCCGGCgACGUCCGGgcGGUGCucgaGCGCCu -3'
miRNA:   3'- -UCGGCUG-UGCGGGCC--UCGCGc---CGCGG- -5'
11432 3' -64.9 NC_003085.1 + 48593 0.66 0.246163
Target:  5'- cGCC-AC-CGCCgGGAagGCGCgagcgaugcgcuuGGCGCCg -3'
miRNA:   3'- uCGGcUGuGCGGgCCU--CGCG-------------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 48362 0.66 0.277702
Target:  5'- -uCCGagugacucacGCGCGCuCCuGAGCGCGGCgagcagcGCCg -3'
miRNA:   3'- ucGGC----------UGUGCG-GGcCUCGCGCCG-------CGG- -5'
11432 3' -64.9 NC_003085.1 + 48225 0.68 0.181595
Target:  5'- uGCCucCGCaGCCCcuccaacuccuccaGcAGCGCGGCGCCg -3'
miRNA:   3'- uCGGcuGUG-CGGG--------------CcUCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 48130 0.68 0.202443
Target:  5'- cGCCaGCA-GUCUGGgcugccuccuccAGCGCGGCGUCg -3'
miRNA:   3'- uCGGcUGUgCGGGCC------------UCGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 47970 0.66 0.249179
Target:  5'- cGCCgGACGgGCCgcgucgagcaagucgCGGAGggaggaCGCGGCGCa -3'
miRNA:   3'- uCGG-CUGUgCGG---------------GCCUC------GCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 47713 0.73 0.085418
Target:  5'- cGUCGACugcuGCGCCUGcugacGGGCGCGGUGCg -3'
miRNA:   3'- uCGGCUG----UGCGGGC-----CUCGCGCCGCGg -5'
11432 3' -64.9 NC_003085.1 + 47592 0.7 0.134227
Target:  5'- gGGCCGAUgaGCGCaagaCGGAGC-CG-CGCCu -3'
miRNA:   3'- -UCGGCUG--UGCGg---GCCUCGcGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 47534 0.73 0.087748
Target:  5'- gGGaCCGACGaGCCCGcGAGCGauGCGCa -3'
miRNA:   3'- -UC-GGCUGUgCGGGC-CUCGCgcCGCGg -5'
11432 3' -64.9 NC_003085.1 + 47363 0.67 0.229267
Target:  5'- cGCCGAUG-GCgCCGaGGUGCGGCGgCu -3'
miRNA:   3'- uCGGCUGUgCG-GGCcUCGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 46677 0.72 0.090139
Target:  5'- cGCCG-C-CGCCUGGAGCGC--CGCCg -3'
miRNA:   3'- uCGGCuGuGCGGGCCUCGCGccGCGG- -5'
11432 3' -64.9 NC_003085.1 + 45909 0.66 0.265352
Target:  5'- cGcCCGGC-CGCCUuGAGCGUGGU-CCa -3'
miRNA:   3'- uC-GGCUGuGCGGGcCUCGCGCCGcGG- -5'
11432 3' -64.9 NC_003085.1 + 45755 0.68 0.202443
Target:  5'- cGUCGuCACcaccaGCaCCGGA-CGCGGCGUCa -3'
miRNA:   3'- uCGGCuGUG-----CG-GGCCUcGCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 45610 0.68 0.177932
Target:  5'- cGUCGACGCGCCgUGGuccuggaugggcAGUGCGGgaaugcuCGCCg -3'
miRNA:   3'- uCGGCUGUGCGG-GCC------------UCGCGCC-------GCGG- -5'
11432 3' -64.9 NC_003085.1 + 45478 0.71 0.117677
Target:  5'- uGCCGuguCGCGCUCGacaAGCGCGGcCGUCu -3'
miRNA:   3'- uCGGCu--GUGCGGGCc--UCGCGCC-GCGG- -5'
11432 3' -64.9 NC_003085.1 + 45402 0.67 0.234404
Target:  5'- aGGCgGA-GCGCCgucagcgaaagcaUGGGGCGCGGUGgCg -3'
miRNA:   3'- -UCGgCUgUGCGG-------------GCCUCGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 45357 0.66 0.252837
Target:  5'- uGGCUGGCA-GCCUGGAccGCcCGGC-CCa -3'
miRNA:   3'- -UCGGCUGUgCGGGCCU--CGcGCCGcGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.