miRNA display CGI


Results 61 - 80 of 186 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11432 3' -64.9 NC_003085.1 + 47363 0.67 0.229267
Target:  5'- cGCCGAUG-GCgCCGaGGUGCGGCGgCu -3'
miRNA:   3'- uCGGCUGUgCG-GGCcUCGCGCCGCgG- -5'
11432 3' -64.9 NC_003085.1 + 43746 0.67 0.229267
Target:  5'- gAGCCGGgucCGC-CCCGGuggugGGCGCGG-GCUu -3'
miRNA:   3'- -UCGGCU---GUGcGGGCC-----UCGCGCCgCGG- -5'
11432 3' -64.9 NC_003085.1 + 10617 0.67 0.229267
Target:  5'- uGGCCaauGCACcUCCGGcuguGUGgGGCGCCg -3'
miRNA:   3'- -UCGGc--UGUGcGGGCCu---CGCgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 32478 0.67 0.229267
Target:  5'- cGCCGucggcgucGCGgGCCCGGAGCGUcaucucguGGaagauGCCu -3'
miRNA:   3'- uCGGC--------UGUgCGGGCCUCGCG--------CCg----CGG- -5'
11432 3' -64.9 NC_003085.1 + 9078 0.67 0.229267
Target:  5'- uGCCGGCcaGCGCCaGaGGCGuCaGCGCCg -3'
miRNA:   3'- uCGGCUG--UGCGGgCcUCGC-GcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 27324 0.67 0.229267
Target:  5'- gGGCCacCACcuuuggGUCCGGcuGCuGCGGCGCCg -3'
miRNA:   3'- -UCGGcuGUG------CGGGCCu-CG-CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 17215 0.67 0.229267
Target:  5'- uGGUCaGCGcCGCUgGuGAGCacGCGGCGCCc -3'
miRNA:   3'- -UCGGcUGU-GCGGgC-CUCG--CGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 3421 0.67 0.229267
Target:  5'- cAGCCGuauCGCGCCUgcuGGAGaacuucgaGCaGGCGaCCa -3'
miRNA:   3'- -UCGGCu--GUGCGGG---CCUCg-------CG-CCGC-GG- -5'
11432 3' -64.9 NC_003085.1 + 32219 0.67 0.229267
Target:  5'- cGCa-ACAcCGCCCaGAGCacGgGGCGCCg -3'
miRNA:   3'- uCGgcUGU-GCGGGcCUCG--CgCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 40032 0.67 0.227577
Target:  5'- cGCCGGCACGUCCGcguCGUGGUagggaaagaugcucGCCu -3'
miRNA:   3'- uCGGCUGUGCGGGCcucGCGCCG--------------CGG- -5'
11432 3' -64.9 NC_003085.1 + 42704 0.67 0.223672
Target:  5'- cGCCGuC-CGCCac-GGCGCGGCagGCCg -3'
miRNA:   3'- uCGGCuGuGCGGgccUCGCGCCG--CGG- -5'
11432 3' -64.9 NC_003085.1 + 28520 0.67 0.223672
Target:  5'- cGGUgGACGCGUCaGGGcgaaucCGCGGCGUCg -3'
miRNA:   3'- -UCGgCUGUGCGGgCCUc-----GCGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 497 0.67 0.223672
Target:  5'- aGGCUGAgggccUGCGUuuGGAGC-CGGUGUCu -3'
miRNA:   3'- -UCGGCU-----GUGCGggCCUCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 7554 0.67 0.223672
Target:  5'- gGGCU-ACACGCCCgagaaugcgcuGGAGuCGCuGCGUCa -3'
miRNA:   3'- -UCGGcUGUGCGGG-----------CCUC-GCGcCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 28607 0.67 0.223672
Target:  5'- uGGgCGGCAcCGCagCGGcgAGCuCGGCGCCg -3'
miRNA:   3'- -UCgGCUGU-GCGg-GCC--UCGcGCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 15065 0.67 0.218194
Target:  5'- aAGCCucguggGAgUugGCCCuggaGGAGgGaCGGCGCCu -3'
miRNA:   3'- -UCGG------CU-GugCGGG----CCUCgC-GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13452 0.67 0.218194
Target:  5'- uGGCCGcCAucCGCCaagcugucgCGGAGCGUuuccugGGCGUCg -3'
miRNA:   3'- -UCGGCuGU--GCGG---------GCCUCGCG------CCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 13914 0.67 0.218194
Target:  5'- cGGCguGCGCGCguuucggaCGGGGCGCG-CGCCg -3'
miRNA:   3'- -UCGgcUGUGCGg-------GCCUCGCGCcGCGG- -5'
11432 3' -64.9 NC_003085.1 + 828 0.67 0.218194
Target:  5'- cGGCCuGugGCGCaaGGugaaGGCauaCGGCGCCa -3'
miRNA:   3'- -UCGG-CugUGCGggCC----UCGc--GCCGCGG- -5'
11432 3' -64.9 NC_003085.1 + 36352 0.67 0.218194
Target:  5'- gAGCCcgcgcuCACGCaCCucAGCGCGGCGUg -3'
miRNA:   3'- -UCGGcu----GUGCG-GGccUCGCGCCGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.