miRNA display CGI


Results 41 - 60 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11433 3' -62.6 NC_003085.1 + 47213 0.67 0.278288
Target:  5'- gGCCCC-CCGG--UGGGCAgGCAuugcGCACCa -3'
miRNA:   3'- -CGGGGcGGCCcaGCUCGU-CGU----CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 21662 0.67 0.278288
Target:  5'- aGCCCgggagcgaCGCgCGGGU-GAGCAuCAGCGCg -3'
miRNA:   3'- -CGGG--------GCG-GCCCAgCUCGUcGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 20943 0.67 0.278288
Target:  5'- aGCCCCGCgCGcGUcugcaCGAGguGCGGUggcugGCCu -3'
miRNA:   3'- -CGGGGCG-GCcCA-----GCUCguCGUCG-----UGG- -5'
11433 3' -62.6 NC_003085.1 + 10093 0.67 0.277614
Target:  5'- cCCCCGCCGGcgucggaaccgccGUUGAuggaccugcucGCAGCGGacUACCg -3'
miRNA:   3'- cGGGGCGGCC-------------CAGCU-----------CGUCGUC--GUGG- -5'
11433 3' -62.6 NC_003085.1 + 3879 0.67 0.27161
Target:  5'- cGCgCCCGCCGucuGUC--GCGGUGGCACUg -3'
miRNA:   3'- -CG-GGGCGGCc--CAGcuCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 44273 0.67 0.27161
Target:  5'- cGgCCUGCCuGGcuuguuccucccGUCGAGCAGCAauCGCCg -3'
miRNA:   3'- -CgGGGCGG-CC------------CAGCUCGUCGUc-GUGG- -5'
11433 3' -62.6 NC_003085.1 + 31784 0.68 0.265063
Target:  5'- uGCCUgGCCGcGUCGucGGUcuCAGCGCCa -3'
miRNA:   3'- -CGGGgCGGCcCAGC--UCGucGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 30069 0.68 0.265063
Target:  5'- gGCCuuGCUGGGguacCGGcccacGCGGCuGCACa -3'
miRNA:   3'- -CGGggCGGCCCa---GCU-----CGUCGuCGUGg -5'
11433 3' -62.6 NC_003085.1 + 27325 0.68 0.258643
Target:  5'- gGCCaCCaCCuuuGGGUCcGGCugcuGCGGCGCCg -3'
miRNA:   3'- -CGG-GGcGG---CCCAGcUCGu---CGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 6066 0.68 0.258643
Target:  5'- aGCCCCaCCGGGaUGcacCAGCGGCcCCa -3'
miRNA:   3'- -CGGGGcGGCCCaGCuc-GUCGUCGuGG- -5'
11433 3' -62.6 NC_003085.1 + 7622 0.68 0.256743
Target:  5'- aCCagCGCCGGG-CGGGaCucauggggcgcuugGGCGGCGCCg -3'
miRNA:   3'- cGGg-GCGGCCCaGCUC-G--------------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 26886 0.68 0.254853
Target:  5'- gGCgCCGgUGGGUgGAcucaacaccgucucgGCgGGCAGCGCCa -3'
miRNA:   3'- -CGgGGCgGCCCAgCU---------------CG-UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 162 0.68 0.252352
Target:  5'- cGCCUC-CCGGGacgccgacgCGAcGCAGCAGCcacagggggugGCCa -3'
miRNA:   3'- -CGGGGcGGCCCa--------GCU-CGUCGUCG-----------UGG- -5'
11433 3' -62.6 NC_003085.1 + 8869 0.68 0.252352
Target:  5'- gGCCCCucGCCcGGUCG-GCAauGCuGCACUu -3'
miRNA:   3'- -CGGGG--CGGcCCAGCuCGU--CGuCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 31047 0.68 0.248637
Target:  5'- gGCCCUGUCGGccagucgcuucgccUCGGGguGC-GCACCc -3'
miRNA:   3'- -CGGGGCGGCCc-------------AGCUCguCGuCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 38055 0.68 0.246187
Target:  5'- aGCCaCCGCgGcGGUgCGucagccGGCGGUAGCGCUc -3'
miRNA:   3'- -CGG-GGCGgC-CCA-GC------UCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 42008 0.68 0.246187
Target:  5'- uGCCCCGgCGGcGUCG-GCacGGacgagGGCGCCu -3'
miRNA:   3'- -CGGGGCgGCC-CAGCuCG--UCg----UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 18086 0.68 0.240147
Target:  5'- gGCCUCuuugcgGCCgGGGUCGAGCuucuuGuCGGCGCg -3'
miRNA:   3'- -CGGGG------CGG-CCCAGCUCGu----C-GUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 6602 0.68 0.236583
Target:  5'- cGCCCCcgGCCGGGcCGGGaGGUGgggagacgaagacgcGCGCCg -3'
miRNA:   3'- -CGGGG--CGGCCCaGCUCgUCGU---------------CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 27920 0.68 0.234231
Target:  5'- aGCUCgCGCCGGuaGUCacgcaGGGCGuCAGCGCCg -3'
miRNA:   3'- -CGGG-GCGGCC--CAG-----CUCGUcGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.