miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11433 3' -62.6 NC_003085.1 + 21966 0.66 0.321102
Target:  5'- gGCUCCGuuGGcUC-AGCAGguGC-CCg -3'
miRNA:   3'- -CGGGGCggCCcAGcUCGUCguCGuGG- -5'
11433 3' -62.6 NC_003085.1 + 16973 0.66 0.316607
Target:  5'- uCUCCGUCaGGUCGAGCuucuuggccucggccAGUAGCucauCCa -3'
miRNA:   3'- cGGGGCGGcCCAGCUCG---------------UCGUCGu---GG- -5'
11433 3' -62.6 NC_003085.1 + 8653 0.66 0.313637
Target:  5'- aGgCCgGCCGGGacgCGcGUGGCcuugGGCGCCg -3'
miRNA:   3'- -CgGGgCGGCCCa--GCuCGUCG----UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 48985 0.66 0.313637
Target:  5'- aGCCUCGCCcguGGGcaccuGCAaCAGCGCCg -3'
miRNA:   3'- -CGGGGCGG---CCCagcu-CGUcGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 17653 0.66 0.313637
Target:  5'- cGCUCC-UCGGGUguguccgucgCGAGCGGCcGgGCCg -3'
miRNA:   3'- -CGGGGcGGCCCA----------GCUCGUCGuCgUGG- -5'
11433 3' -62.6 NC_003085.1 + 1503 0.67 0.306304
Target:  5'- cGgCCCGuCCGGcGcUCGGGCaagaGGCAGCcgaguACCa -3'
miRNA:   3'- -CgGGGC-GGCC-C-AGCUCG----UCGUCG-----UGG- -5'
11433 3' -62.6 NC_003085.1 + 23986 0.67 0.306304
Target:  5'- uCUCC-CUGGGUgaagaaGAGCGGCGGCcgACCa -3'
miRNA:   3'- cGGGGcGGCCCAg-----CUCGUCGUCG--UGG- -5'
11433 3' -62.6 NC_003085.1 + 13543 0.67 0.305577
Target:  5'- aCCCCGaCGGGUucagcaccgaggCGAGCAagGCgcgcguggacgugGGCACCg -3'
miRNA:   3'- cGGGGCgGCCCA------------GCUCGU--CG-------------UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 36869 0.67 0.299102
Target:  5'- -aCCCGgUGGuGUCcGGCaccaccaucAGCAGCACCu -3'
miRNA:   3'- cgGGGCgGCC-CAGcUCG---------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 23349 0.67 0.299102
Target:  5'- aGCgCCGCCGGccGcCGAggcGCAGCcccAGCACUu -3'
miRNA:   3'- -CGgGGCGGCC--CaGCU---CGUCG---UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 28708 0.67 0.299102
Target:  5'- aGCCCgaaGCCGGG-C-AGCAGCcGguCCu -3'
miRNA:   3'- -CGGGg--CGGCCCaGcUCGUCGuCguGG- -5'
11433 3' -62.6 NC_003085.1 + 3430 0.67 0.296968
Target:  5'- cGCgCCUGCUGGaGaacuUCGAGCAGgCgaccacguacgccgAGCACCa -3'
miRNA:   3'- -CG-GGGCGGCC-C----AGCUCGUC-G--------------UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 46208 0.67 0.294845
Target:  5'- -gCCCGCucauggCGGG-CGAGUgugugggccggcccaGGUAGCGCCg -3'
miRNA:   3'- cgGGGCG------GCCCaGCUCG---------------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 17952 0.67 0.292033
Target:  5'- gGCUCUGCUGGGgcaccUGaAGCgccGGCAGCGCg -3'
miRNA:   3'- -CGGGGCGGCCCa----GC-UCG---UCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 5838 0.67 0.292033
Target:  5'- aGCCCUGCa-GGUcCGGGacugGGaCGGCACCg -3'
miRNA:   3'- -CGGGGCGgcCCA-GCUCg---UC-GUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 8486 0.67 0.292033
Target:  5'- aGCCCuUGCCGcuugCGAGCgcuGGCGGgGCCa -3'
miRNA:   3'- -CGGG-GCGGCcca-GCUCG---UCGUCgUGG- -5'
11433 3' -62.6 NC_003085.1 + 32227 0.67 0.292033
Target:  5'- cGCCCagaGCaCGGGgcgccgCGuGCucaccAGCGGCGCUg -3'
miRNA:   3'- -CGGGg--CG-GCCCa-----GCuCG-----UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 4794 0.67 0.292033
Target:  5'- gGCaUCCGCCaGGaCGGGCccaaAGCccGGCACCg -3'
miRNA:   3'- -CG-GGGCGGcCCaGCUCG----UCG--UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 29150 0.67 0.291333
Target:  5'- cGCCUacucgcaggcgaCGUCGcGGUUGgacccgcAGUGGCAGCGCCg -3'
miRNA:   3'- -CGGG------------GCGGC-CCAGC-------UCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 22589 0.67 0.285095
Target:  5'- -aCCCaCCGGcGcCG-GCAGguGCGCCu -3'
miRNA:   3'- cgGGGcGGCC-CaGCuCGUCguCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.