miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11433 3' -62.6 NC_003085.1 + 42683 0.7 0.1788
Target:  5'- gGCCCgGUacucgucaagugucuCaGGcUUGAGCGGCGGCACCu -3'
miRNA:   3'- -CGGGgCG---------------GcCC-AGCUCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 17433 0.7 0.1816
Target:  5'- cGCCCCcaucaccgcGCCGGuacgcaCGAGUuguccaagggaGGCAGCGCCa -3'
miRNA:   3'- -CGGGG---------CGGCCca----GCUCG-----------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 28593 0.69 0.196186
Target:  5'- uGCCUugCGCUGGGU-GGGCGGCAccGCAgCg -3'
miRNA:   3'- -CGGG--GCGGCCCAgCUCGUCGU--CGUgG- -5'
11433 3' -62.6 NC_003085.1 + 42817 0.69 0.196186
Target:  5'- uGUCuuGCaCGGGUCcGGCgcuGGCGGCGCg -3'
miRNA:   3'- -CGGggCG-GCCCAGcUCG---UCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 40954 0.69 0.201271
Target:  5'- uGCgCCCGCUGGugcgcGUCGuacuGGCGGgcCAGCGCCu -3'
miRNA:   3'- -CG-GGGCGGCC-----CAGC----UCGUC--GUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 32874 0.69 0.20647
Target:  5'- cCUCCGaagaaguagcCCGGGUCGucGCAGUggccgGGCGCCa -3'
miRNA:   3'- cGGGGC----------GGCCCAGCu-CGUCG-----UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 37387 0.69 0.206996
Target:  5'- cGCCCCGuagacgagaaucgccCCGGGguagcccgCGaAGCGgcgcacgaagucgcGCAGCACCg -3'
miRNA:   3'- -CGGGGC---------------GGCCCa-------GC-UCGU--------------CGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 2270 0.69 0.217216
Target:  5'- gGCCUCGUCGcGGacuucuucgCGGGCuccGGCAGCACg -3'
miRNA:   3'- -CGGGGCGGC-CCa--------GCUCG---UCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 29021 0.69 0.223329
Target:  5'- cGgCCCGCUGGGggaugccuccaacgcCGuccAGCAGCAGUugGCCa -3'
miRNA:   3'- -CgGGGCGGCCCa--------------GC---UCGUCGUCG--UGG- -5'
11433 3' -62.6 NC_003085.1 + 22722 0.69 0.228438
Target:  5'- --gCCGCC-GGUUGAGUGaCAGCACCg -3'
miRNA:   3'- cggGGCGGcCCAGCUCGUcGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 27920 0.68 0.234231
Target:  5'- aGCUCgCGCCGGuaGUCacgcaGGGCGuCAGCGCCg -3'
miRNA:   3'- -CGGG-GCGGCC--CAG-----CUCGUcGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 6602 0.68 0.236583
Target:  5'- cGCCCCcgGCCGGGcCGGGaGGUGgggagacgaagacgcGCGCCg -3'
miRNA:   3'- -CGGGG--CGGCCCaGCUCgUCGU---------------CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 18086 0.68 0.240147
Target:  5'- gGCCUCuuugcgGCCgGGGUCGAGCuucuuGuCGGCGCg -3'
miRNA:   3'- -CGGGG------CGG-CCCAGCUCGu----C-GUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 38055 0.68 0.246187
Target:  5'- aGCCaCCGCgGcGGUgCGucagccGGCGGUAGCGCUc -3'
miRNA:   3'- -CGG-GGCGgC-CCA-GC------UCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 42008 0.68 0.246187
Target:  5'- uGCCCCGgCGGcGUCG-GCacGGacgagGGCGCCu -3'
miRNA:   3'- -CGGGGCgGCC-CAGCuCG--UCg----UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 31047 0.68 0.248637
Target:  5'- gGCCCUGUCGGccagucgcuucgccUCGGGguGC-GCACCc -3'
miRNA:   3'- -CGGGGCGGCCc-------------AGCUCguCGuCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 8869 0.68 0.252352
Target:  5'- gGCCCCucGCCcGGUCG-GCAauGCuGCACUu -3'
miRNA:   3'- -CGGGG--CGGcCCAGCuCGU--CGuCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 162 0.68 0.252352
Target:  5'- cGCCUC-CCGGGacgccgacgCGAcGCAGCAGCcacagggggugGCCa -3'
miRNA:   3'- -CGGGGcGGCCCa--------GCU-CGUCGUCG-----------UGG- -5'
11433 3' -62.6 NC_003085.1 + 26886 0.68 0.254853
Target:  5'- gGCgCCGgUGGGUgGAcucaacaccgucucgGCgGGCAGCGCCa -3'
miRNA:   3'- -CGgGGCgGCCCAgCU---------------CG-UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 7622 0.68 0.256743
Target:  5'- aCCagCGCCGGG-CGGGaCucauggggcgcuugGGCGGCGCCg -3'
miRNA:   3'- cGGg-GCGGCCCaGCUC-G--------------UCGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.