miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11433 3' -62.6 NC_003085.1 + 37061 1.11 0.000124
Target:  5'- gGCCCCGCCGGGUCGAGCAGCAGCACCc -3'
miRNA:   3'- -CGGGGCGGCCCAGCUCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 12481 0.81 0.026622
Target:  5'- uGCCCUGCUGGaGUCGA--AGCGGCGCCa -3'
miRNA:   3'- -CGGGGCGGCC-CAGCUcgUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 27078 0.78 0.045436
Target:  5'- cGCCCCGUCucgGGGUUGGggcgguacacGUAGCGGCGCCu -3'
miRNA:   3'- -CGGGGCGG---CCCAGCU----------CGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 48593 0.77 0.056799
Target:  5'- cGCCaCCGCCGGGaaggcgCGAGCGauGCgcuuGGCGCCg -3'
miRNA:   3'- -CGG-GGCGGCCCa-----GCUCGU--CG----UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 12782 0.76 0.061736
Target:  5'- uGCCCCuGCCGccguuGUCGGGCAGguGCuCCa -3'
miRNA:   3'- -CGGGG-CGGCc----CAGCUCGUCguCGuGG- -5'
11433 3' -62.6 NC_003085.1 + 29409 0.76 0.070897
Target:  5'- uGUCCCGCUccaggaGGGcgCGGGCGGCGGCaauGCCg -3'
miRNA:   3'- -CGGGGCGG------CCCa-GCUCGUCGUCG---UGG- -5'
11433 3' -62.6 NC_003085.1 + 23798 0.74 0.098505
Target:  5'- cGUCCgGCCGGuaGUCGcAGUccGCAGCACCg -3'
miRNA:   3'- -CGGGgCGGCC--CAGC-UCGu-CGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 17220 0.73 0.106855
Target:  5'- aGCgCCGCUGG--UGAGCAcGCGGCGCCc -3'
miRNA:   3'- -CGgGGCGGCCcaGCUCGU-CGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 24834 0.73 0.109783
Target:  5'- cCUCCGCCGaGGUgaAGCGcuGCAGCACCu -3'
miRNA:   3'- cGGGGCGGC-CCAgcUCGU--CGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 38142 0.73 0.109783
Target:  5'- cGCCCUGCUGGcGUUG-GUGGUGGCGCUc -3'
miRNA:   3'- -CGGGGCGGCC-CAGCuCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 22771 0.73 0.112786
Target:  5'- -gCCCGCCGcGGUgGcgacGGCAGCGGCaacgGCCg -3'
miRNA:   3'- cgGGGCGGC-CCAgC----UCGUCGUCG----UGG- -5'
11433 3' -62.6 NC_003085.1 + 32779 0.73 0.118386
Target:  5'- cCCCCGCCcugcguguagcaGGUCGAcaGGCAGCGCCc -3'
miRNA:   3'- cGGGGCGGc-----------CCAGCUcgUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 23864 0.72 0.128642
Target:  5'- aGCCCCcauucgcGUCGGGgcgUGAGCgaacGGCAGCAgCCg -3'
miRNA:   3'- -CGGGG-------CGGCCCa--GCUCG----UCGUCGU-GG- -5'
11433 3' -62.6 NC_003085.1 + 24855 0.72 0.132474
Target:  5'- uUCUCGCCuGGGcCGGcaaccucaccuGCAGCGGCGCCc -3'
miRNA:   3'- cGGGGCGG-CCCaGCU-----------CGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 20818 0.71 0.142331
Target:  5'- uCCCCGCCuccaggaagGGGUaucgaaaggccggcCGcAGCAGCgAGCGCCa -3'
miRNA:   3'- cGGGGCGG---------CCCA--------------GC-UCGUCG-UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 24658 0.71 0.147312
Target:  5'- aGCCgCgCGCCGcGaCGGGCugAGCGGCACCa -3'
miRNA:   3'- -CGG-G-GCGGCcCaGCUCG--UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 7955 0.71 0.151252
Target:  5'- cGCCCgguaGCCGaugaaGUCGGGCcgguAGCAGCGCUg -3'
miRNA:   3'- -CGGGg---CGGCc----CAGCUCG----UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 26569 0.71 0.151252
Target:  5'- aGCCuCCGCCGGaGUCGcaccaGGCuccuCGGUACCa -3'
miRNA:   3'- -CGG-GGCGGCC-CAGC-----UCGuc--GUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 10553 0.71 0.155287
Target:  5'- aCCCCGCCuuGaCGAGaguCGGCGGCGCCg -3'
miRNA:   3'- cGGGGCGGccCaGCUC---GUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 34294 0.71 0.155287
Target:  5'- uGUUCCGCCGaGcGUCGcgGGCAG-GGCACCg -3'
miRNA:   3'- -CGGGGCGGC-C-CAGC--UCGUCgUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.