miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11433 3' -62.6 NC_003085.1 + 17952 0.67 0.292033
Target:  5'- gGCUCUGCUGGGgcaccUGaAGCgccGGCAGCGCg -3'
miRNA:   3'- -CGGGGCGGCCCa----GC-UCG---UCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 42008 0.68 0.246187
Target:  5'- uGCCCCGgCGGcGUCG-GCacGGacgagGGCGCCu -3'
miRNA:   3'- -CGGGGCgGCC-CAGCuCG--UCg----UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 26886 0.68 0.254853
Target:  5'- gGCgCCGgUGGGUgGAcucaacaccgucucgGCgGGCAGCGCCa -3'
miRNA:   3'- -CGgGGCgGCCCAgCU---------------CG-UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 6066 0.68 0.258643
Target:  5'- aGCCCCaCCGGGaUGcacCAGCGGCcCCa -3'
miRNA:   3'- -CGGGGcGGCCCaGCuc-GUCGUCGuGG- -5'
11433 3' -62.6 NC_003085.1 + 44273 0.67 0.27161
Target:  5'- cGgCCUGCCuGGcuuguuccucccGUCGAGCAGCAauCGCCg -3'
miRNA:   3'- -CgGGGCGG-CC------------CAGCUCGUCGUc-GUGG- -5'
11433 3' -62.6 NC_003085.1 + 3879 0.67 0.27161
Target:  5'- cGCgCCCGCCGucuGUC--GCGGUGGCACUg -3'
miRNA:   3'- -CG-GGGCGGCc--CAGcuCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 10093 0.67 0.277614
Target:  5'- cCCCCGCCGGcgucggaaccgccGUUGAuggaccugcucGCAGCGGacUACCg -3'
miRNA:   3'- cGGGGCGGCC-------------CAGCU-----------CGUCGUC--GUGG- -5'
11433 3' -62.6 NC_003085.1 + 20943 0.67 0.278288
Target:  5'- aGCCCCGCgCGcGUcugcaCGAGguGCGGUggcugGCCu -3'
miRNA:   3'- -CGGGGCG-GCcCA-----GCUCguCGUCG-----UGG- -5'
11433 3' -62.6 NC_003085.1 + 29150 0.67 0.291333
Target:  5'- cGCCUacucgcaggcgaCGUCGcGGUUGgacccgcAGUGGCAGCGCCg -3'
miRNA:   3'- -CGGG------------GCGGC-CCAGC-------UCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 29021 0.69 0.223329
Target:  5'- cGgCCCGCUGGGggaugccuccaacgcCGuccAGCAGCAGUugGCCa -3'
miRNA:   3'- -CgGGGCGGCCCa--------------GC---UCGUCGUCG--UGG- -5'
11433 3' -62.6 NC_003085.1 + 2270 0.69 0.217216
Target:  5'- gGCCUCGUCGcGGacuucuucgCGGGCuccGGCAGCACg -3'
miRNA:   3'- -CGGGGCGGC-CCa--------GCUCG---UCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 42817 0.69 0.196186
Target:  5'- uGUCuuGCaCGGGUCcGGCgcuGGCGGCGCg -3'
miRNA:   3'- -CGGggCG-GCCCAGcUCG---UCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 12782 0.76 0.061736
Target:  5'- uGCCCCuGCCGccguuGUCGGGCAGguGCuCCa -3'
miRNA:   3'- -CGGGG-CGGCc----CAGCUCGUCguCGuGG- -5'
11433 3' -62.6 NC_003085.1 + 23798 0.74 0.098505
Target:  5'- cGUCCgGCCGGuaGUCGcAGUccGCAGCACCg -3'
miRNA:   3'- -CGGGgCGGCC--CAGC-UCGu-CGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 38142 0.73 0.109783
Target:  5'- cGCCCUGCUGGcGUUG-GUGGUGGCGCUc -3'
miRNA:   3'- -CGGGGCGGCC-CAGCuCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 22771 0.73 0.112786
Target:  5'- -gCCCGCCGcGGUgGcgacGGCAGCGGCaacgGCCg -3'
miRNA:   3'- cgGGGCGGC-CCAgC----UCGUCGUCG----UGG- -5'
11433 3' -62.6 NC_003085.1 + 23864 0.72 0.128642
Target:  5'- aGCCCCcauucgcGUCGGGgcgUGAGCgaacGGCAGCAgCCg -3'
miRNA:   3'- -CGGGG-------CGGCCCa--GCUCG----UCGUCGU-GG- -5'
11433 3' -62.6 NC_003085.1 + 24855 0.72 0.132474
Target:  5'- uUCUCGCCuGGGcCGGcaaccucaccuGCAGCGGCGCCc -3'
miRNA:   3'- cGGGGCGG-CCCaGCU-----------CGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 34294 0.71 0.155287
Target:  5'- uGUUCCGCCGaGcGUCGcgGGCAG-GGCACCg -3'
miRNA:   3'- -CGGGGCGGC-C-CAGC--UCGUCgUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 42683 0.7 0.1788
Target:  5'- gGCCCgGUacucgucaagugucuCaGGcUUGAGCGGCGGCACCu -3'
miRNA:   3'- -CGGGgCG---------------GcCC-AGCUCGUCGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.