miRNA display CGI


Results 1 - 20 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11433 3' -62.6 NC_003085.1 + 43466 0.66 0.352283
Target:  5'- cGCCCaGCCGuaGG-CGAGCcaacuGGCaAGCAUCg -3'
miRNA:   3'- -CGGGgCGGC--CCaGCUCG-----UCG-UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 8486 0.67 0.292033
Target:  5'- aGCCCuUGCCGcuugCGAGCgcuGGCGGgGCCa -3'
miRNA:   3'- -CGGG-GCGGCcca-GCUCG---UCGUCgUGG- -5'
11433 3' -62.6 NC_003085.1 + 22589 0.67 0.285095
Target:  5'- -aCCCaCCGGcGcCG-GCAGguGCGCCu -3'
miRNA:   3'- cgGGGcGGCC-CaGCuCGUCguCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 37061 1.11 0.000124
Target:  5'- gGCCCCGCCGGGUCGAGCAGCAGCACCc -3'
miRNA:   3'- -CGGGGCGGCCCAGCUCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 24219 0.66 0.33565
Target:  5'- -gCCCGCCGcg--GAGCgcaccagGGCGGCGCCg -3'
miRNA:   3'- cgGGGCGGCccagCUCG-------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 34289 0.66 0.33565
Target:  5'- gGCUCaGCCGGGcCGucagcgcagagggGGCAGUAGUGCg -3'
miRNA:   3'- -CGGGgCGGCCCaGC-------------UCGUCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 10620 0.66 0.328699
Target:  5'- cGCCgUCGCaguGGGaCGAcGCGGCAguGCGCCc -3'
miRNA:   3'- -CGG-GGCGg--CCCaGCU-CGUCGU--CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 42089 0.66 0.321102
Target:  5'- gGCgCCGUCGGccUCGuacuGgAGCGGCGCCc -3'
miRNA:   3'- -CGgGGCGGCCc-AGCu---CgUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 17653 0.66 0.313637
Target:  5'- cGCUCC-UCGGGUguguccgucgCGAGCGGCcGgGCCg -3'
miRNA:   3'- -CGGGGcGGCCCA----------GCUCGUCGuCgUGG- -5'
11433 3' -62.6 NC_003085.1 + 46208 0.67 0.294845
Target:  5'- -gCCCGCucauggCGGG-CGAGUgugugggccggcccaGGUAGCGCCg -3'
miRNA:   3'- cgGGGCG------GCCCaGCUCG---------------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 1503 0.67 0.306304
Target:  5'- cGgCCCGuCCGGcGcUCGGGCaagaGGCAGCcgaguACCa -3'
miRNA:   3'- -CgGGGC-GGCC-C-AGCUCG----UCGUCG-----UGG- -5'
11433 3' -62.6 NC_003085.1 + 48985 0.66 0.313637
Target:  5'- aGCCUCGCCcguGGGcaccuGCAaCAGCGCCg -3'
miRNA:   3'- -CGGGGCGG---CCCagcu-CGUcGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 38983 0.66 0.352283
Target:  5'- cGCCgCGCagcaGGUCGGcCAGCcgaggGGCGCCa -3'
miRNA:   3'- -CGGgGCGgc--CCAGCUcGUCG-----UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 23986 0.67 0.306304
Target:  5'- uCUCC-CUGGGUgaagaaGAGCGGCGGCcgACCa -3'
miRNA:   3'- cGGGGcGGCCCAg-----CUCGUCGUCG--UGG- -5'
11433 3' -62.6 NC_003085.1 + 24417 0.66 0.352283
Target:  5'- cGCgCCGaacaCCGGGUccuucgcgCGGGUgauggugcccAGCGGCGCCu -3'
miRNA:   3'- -CGgGGC----GGCCCA--------GCUCG----------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 16973 0.66 0.316607
Target:  5'- uCUCCGUCaGGUCGAGCuucuuggccucggccAGUAGCucauCCa -3'
miRNA:   3'- cGGGGCGGcCCAGCUCG---------------UCGUCGu---GG- -5'
11433 3' -62.6 NC_003085.1 + 28708 0.67 0.299102
Target:  5'- aGCCCgaaGCCGGG-C-AGCAGCcGguCCu -3'
miRNA:   3'- -CGGGg--CGGCCCaGcUCGUCGuCguGG- -5'
11433 3' -62.6 NC_003085.1 + 4794 0.67 0.292033
Target:  5'- gGCaUCCGCCaGGaCGGGCccaaAGCccGGCACCg -3'
miRNA:   3'- -CG-GGGCGGcCCaGCUCG----UCG--UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 23126 0.66 0.352283
Target:  5'- aUCCCGUCuGGUCGAcgaaGCgguuguagucgGGCGGCAUCu -3'
miRNA:   3'- cGGGGCGGcCCAGCU----CG-----------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 26134 0.66 0.328699
Target:  5'- cGCUUgGCCGGccaGAGCGGCgucaAGCAUCu -3'
miRNA:   3'- -CGGGgCGGCCcagCUCGUCG----UCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.