miRNA display CGI


Results 1 - 20 of 90 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11433 3' -62.6 NC_003085.1 + 162 0.68 0.252352
Target:  5'- cGCCUC-CCGGGacgccgacgCGAcGCAGCAGCcacagggggugGCCa -3'
miRNA:   3'- -CGGGGcGGCCCa--------GCU-CGUCGUCG-----------UGG- -5'
11433 3' -62.6 NC_003085.1 + 1503 0.67 0.306304
Target:  5'- cGgCCCGuCCGGcGcUCGGGCaagaGGCAGCcgaguACCa -3'
miRNA:   3'- -CgGGGC-GGCC-C-AGCUCG----UCGUCG-----UGG- -5'
11433 3' -62.6 NC_003085.1 + 2270 0.69 0.217216
Target:  5'- gGCCUCGUCGcGGacuucuucgCGGGCuccGGCAGCACg -3'
miRNA:   3'- -CGGGGCGGC-CCa--------GCUCG---UCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 3430 0.67 0.296968
Target:  5'- cGCgCCUGCUGGaGaacuUCGAGCAGgCgaccacguacgccgAGCACCa -3'
miRNA:   3'- -CG-GGGCGGCC-C----AGCUCGUC-G--------------UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 3879 0.67 0.27161
Target:  5'- cGCgCCCGCCGucuGUC--GCGGUGGCACUg -3'
miRNA:   3'- -CG-GGGCGGCc--CAGcuCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 4794 0.67 0.292033
Target:  5'- gGCaUCCGCCaGGaCGGGCccaaAGCccGGCACCg -3'
miRNA:   3'- -CG-GGGCGGcCCaGCUCG----UCG--UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 5838 0.67 0.292033
Target:  5'- aGCCCUGCa-GGUcCGGGacugGGaCGGCACCg -3'
miRNA:   3'- -CGGGGCGgcCCA-GCUCg---UC-GUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 6066 0.68 0.258643
Target:  5'- aGCCCCaCCGGGaUGcacCAGCGGCcCCa -3'
miRNA:   3'- -CGGGGcGGCCCaGCuc-GUCGUCGuGG- -5'
11433 3' -62.6 NC_003085.1 + 6602 0.68 0.236583
Target:  5'- cGCCCCcgGCCGGGcCGGGaGGUGgggagacgaagacgcGCGCCg -3'
miRNA:   3'- -CGGGG--CGGCCCaGCUCgUCGU---------------CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 7622 0.68 0.256743
Target:  5'- aCCagCGCCGGG-CGGGaCucauggggcgcuugGGCGGCGCCg -3'
miRNA:   3'- cGGg-GCGGCCCaGCUC-G--------------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 7955 0.71 0.151252
Target:  5'- cGCCCgguaGCCGaugaaGUCGGGCcgguAGCAGCGCUg -3'
miRNA:   3'- -CGGGg---CGGCc----CAGCUCG----UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 8486 0.67 0.292033
Target:  5'- aGCCCuUGCCGcuugCGAGCgcuGGCGGgGCCa -3'
miRNA:   3'- -CGGG-GCGGCcca-GCUCG---UCGUCgUGG- -5'
11433 3' -62.6 NC_003085.1 + 8653 0.66 0.313637
Target:  5'- aGgCCgGCCGGGacgCGcGUGGCcuugGGCGCCg -3'
miRNA:   3'- -CgGGgCGGCCCa--GCuCGUCG----UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 8869 0.68 0.252352
Target:  5'- gGCCCCucGCCcGGUCG-GCAauGCuGCACUu -3'
miRNA:   3'- -CGGGG--CGGcCCAGCuCGU--CGuCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 10093 0.67 0.277614
Target:  5'- cCCCCGCCGGcgucggaaccgccGUUGAuggaccugcucGCAGCGGacUACCg -3'
miRNA:   3'- cGGGGCGGCC-------------CAGCU-----------CGUCGUC--GUGG- -5'
11433 3' -62.6 NC_003085.1 + 10553 0.71 0.155287
Target:  5'- aCCCCGCCuuGaCGAGaguCGGCGGCGCCg -3'
miRNA:   3'- cGGGGCGGccCaGCUC---GUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 10620 0.66 0.328699
Target:  5'- cGCCgUCGCaguGGGaCGAcGCGGCAguGCGCCc -3'
miRNA:   3'- -CGG-GGCGg--CCCaGCU-CGUCGU--CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 11808 0.66 0.34429
Target:  5'- uGCCCCaucGCCGGGUgcccCGAcGCugaGGCGGaggaCACCc -3'
miRNA:   3'- -CGGGG---CGGCCCA----GCU-CG---UCGUC----GUGG- -5'
11433 3' -62.6 NC_003085.1 + 12305 0.66 0.336429
Target:  5'- uGgUCCGCUGGGUUGcGGC-GCA-CACCg -3'
miRNA:   3'- -CgGGGCGGCCCAGC-UCGuCGUcGUGG- -5'
11433 3' -62.6 NC_003085.1 + 12481 0.81 0.026622
Target:  5'- uGCCCUGCUGGaGUCGA--AGCGGCGCCa -3'
miRNA:   3'- -CGGGGCGGCC-CAGCUcgUCGUCGUGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.