miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11433 3' -62.6 NC_003085.1 + 12782 0.76 0.061736
Target:  5'- uGCCCCuGCCGccguuGUCGGGCAGguGCuCCa -3'
miRNA:   3'- -CGGGG-CGGCc----CAGCUCGUCguCGuGG- -5'
11433 3' -62.6 NC_003085.1 + 13543 0.67 0.305577
Target:  5'- aCCCCGaCGGGUucagcaccgaggCGAGCAagGCgcgcguggacgugGGCACCg -3'
miRNA:   3'- cGGGGCgGCCCA------------GCUCGU--CG-------------UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 15166 0.66 0.327934
Target:  5'- uGCCCCcucugcgcugacgGCCcGGcUGAGCcGguGCGCCa -3'
miRNA:   3'- -CGGGG-------------CGGcCCaGCUCGuCguCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 16973 0.66 0.316607
Target:  5'- uCUCCGUCaGGUCGAGCuucuuggccucggccAGUAGCucauCCa -3'
miRNA:   3'- cGGGGCGGcCCAGCUCG---------------UCGUCGu---GG- -5'
11433 3' -62.6 NC_003085.1 + 17220 0.73 0.106855
Target:  5'- aGCgCCGCUGG--UGAGCAcGCGGCGCCc -3'
miRNA:   3'- -CGgGGCGGCCcaGCUCGU-CGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 17433 0.7 0.1816
Target:  5'- cGCCCCcaucaccgcGCCGGuacgcaCGAGUuguccaagggaGGCAGCGCCa -3'
miRNA:   3'- -CGGGG---------CGGCCca----GCUCG-----------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 17653 0.66 0.313637
Target:  5'- cGCUCC-UCGGGUguguccgucgCGAGCGGCcGgGCCg -3'
miRNA:   3'- -CGGGGcGGCCCA----------GCUCGUCGuCgUGG- -5'
11433 3' -62.6 NC_003085.1 + 17952 0.67 0.292033
Target:  5'- gGCUCUGCUGGGgcaccUGaAGCgccGGCAGCGCg -3'
miRNA:   3'- -CGGGGCGGCCCa----GC-UCG---UCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 18086 0.68 0.240147
Target:  5'- gGCCUCuuugcgGCCgGGGUCGAGCuucuuGuCGGCGCg -3'
miRNA:   3'- -CGGGG------CGG-CCCAGCUCGu----C-GUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 18711 0.66 0.328699
Target:  5'- cGCCCCGCCuGa-CGAGaCGGgAcGCGCCu -3'
miRNA:   3'- -CGGGGCGGcCcaGCUC-GUCgU-CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 18758 0.66 0.347471
Target:  5'- aGCCgCCGCUGGaG-CGGGCgauggacaaagcgaaGGCGGCugUc -3'
miRNA:   3'- -CGG-GGCGGCC-CaGCUCG---------------UCGUCGugG- -5'
11433 3' -62.6 NC_003085.1 + 20818 0.71 0.142331
Target:  5'- uCCCCGCCuccaggaagGGGUaucgaaaggccggcCGcAGCAGCgAGCGCCa -3'
miRNA:   3'- cGGGGCGG---------CCCA--------------GC-UCGUCG-UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 20943 0.67 0.278288
Target:  5'- aGCCCCGCgCGcGUcugcaCGAGguGCGGUggcugGCCu -3'
miRNA:   3'- -CGGGGCG-GCcCA-----GCUCguCGUCG-----UGG- -5'
11433 3' -62.6 NC_003085.1 + 21662 0.67 0.278288
Target:  5'- aGCCCgggagcgaCGCgCGGGU-GAGCAuCAGCGCg -3'
miRNA:   3'- -CGGG--------GCG-GCCCAgCUCGUcGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 21966 0.66 0.321102
Target:  5'- gGCUCCGuuGGcUC-AGCAGguGC-CCg -3'
miRNA:   3'- -CGGGGCggCCcAGcUCGUCguCGuGG- -5'
11433 3' -62.6 NC_003085.1 + 22589 0.67 0.285095
Target:  5'- -aCCCaCCGGcGcCG-GCAGguGCGCCu -3'
miRNA:   3'- cgGGGcGGCC-CaGCuCGUCguCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 22722 0.69 0.228438
Target:  5'- --gCCGCC-GGUUGAGUGaCAGCACCg -3'
miRNA:   3'- cggGGCGGcCCAGCUCGUcGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 22771 0.73 0.112786
Target:  5'- -gCCCGCCGcGGUgGcgacGGCAGCGGCaacgGCCg -3'
miRNA:   3'- cgGGGCGGC-CCAgC----UCGUCGUCG----UGG- -5'
11433 3' -62.6 NC_003085.1 + 23126 0.66 0.352283
Target:  5'- aUCCCGUCuGGUCGAcgaaGCgguuguagucgGGCGGCAUCu -3'
miRNA:   3'- cGGGGCGGcCCAGCU----CG-----------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 23349 0.67 0.299102
Target:  5'- aGCgCCGCCGGccGcCGAggcGCAGCcccAGCACUu -3'
miRNA:   3'- -CGgGGCGGCC--CaGCU---CGUCG---UCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.