miRNA display CGI


Results 21 - 40 of 90 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11433 3' -62.6 NC_003085.1 + 10620 0.66 0.328699
Target:  5'- cGCCgUCGCaguGGGaCGAcGCGGCAguGCGCCc -3'
miRNA:   3'- -CGG-GGCGg--CCCaGCU-CGUCGU--CGUGG- -5'
11433 3' -62.6 NC_003085.1 + 26134 0.66 0.328699
Target:  5'- cGCUUgGCCGGccaGAGCGGCgucaAGCAUCu -3'
miRNA:   3'- -CGGGgCGGCCcagCUCGUCG----UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 34289 0.66 0.33565
Target:  5'- gGCUCaGCCGGGcCGucagcgcagagggGGCAGUAGUGCg -3'
miRNA:   3'- -CGGGgCGGCCCaGC-------------UCGUCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 24219 0.66 0.33565
Target:  5'- -gCCCGCCGcg--GAGCgcaccagGGCGGCGCCg -3'
miRNA:   3'- cgGGGCGGCccagCUCG-------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 23126 0.66 0.352283
Target:  5'- aUCCCGUCuGGUCGAcgaaGCgguuguagucgGGCGGCAUCu -3'
miRNA:   3'- cGGGGCGGcCCAGCU----CG-----------UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 17952 0.67 0.292033
Target:  5'- gGCUCUGCUGGGgcaccUGaAGCgccGGCAGCGCg -3'
miRNA:   3'- -CGGGGCGGCCCa----GC-UCG---UCGUCGUGg -5'
11433 3' -62.6 NC_003085.1 + 1503 0.67 0.306304
Target:  5'- cGgCCCGuCCGGcGcUCGGGCaagaGGCAGCcgaguACCa -3'
miRNA:   3'- -CgGGGC-GGCC-C-AGCUCG----UCGUCG-----UGG- -5'
11433 3' -62.6 NC_003085.1 + 23986 0.67 0.306304
Target:  5'- uCUCC-CUGGGUgaagaaGAGCGGCGGCcgACCa -3'
miRNA:   3'- cGGGGcGGCCCAg-----CUCGUCGUCG--UGG- -5'
11433 3' -62.6 NC_003085.1 + 13543 0.67 0.305577
Target:  5'- aCCCCGaCGGGUucagcaccgaggCGAGCAagGCgcgcguggacgugGGCACCg -3'
miRNA:   3'- cGGGGCgGCCCA------------GCUCGU--CG-------------UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 44273 0.67 0.27161
Target:  5'- cGgCCUGCCuGGcuuguuccucccGUCGAGCAGCAauCGCCg -3'
miRNA:   3'- -CgGGGCGG-CC------------CAGCUCGUCGUc-GUGG- -5'
11433 3' -62.6 NC_003085.1 + 3879 0.67 0.27161
Target:  5'- cGCgCCCGCCGucuGUC--GCGGUGGCACUg -3'
miRNA:   3'- -CG-GGGCGGCc--CAGcuCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 10093 0.67 0.277614
Target:  5'- cCCCCGCCGGcgucggaaccgccGUUGAuggaccugcucGCAGCGGacUACCg -3'
miRNA:   3'- cGGGGCGGCC-------------CAGCU-----------CGUCGUC--GUGG- -5'
11433 3' -62.6 NC_003085.1 + 20943 0.67 0.278288
Target:  5'- aGCCCCGCgCGcGUcugcaCGAGguGCGGUggcugGCCu -3'
miRNA:   3'- -CGGGGCG-GCcCA-----GCUCguCGUCG-----UGG- -5'
11433 3' -62.6 NC_003085.1 + 29150 0.67 0.291333
Target:  5'- cGCCUacucgcaggcgaCGUCGcGGUUGgacccgcAGUGGCAGCGCCg -3'
miRNA:   3'- -CGGG------------GCGGC-CCAGC-------UCGUCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 28708 0.67 0.299102
Target:  5'- aGCCCgaaGCCGGG-C-AGCAGCcGguCCu -3'
miRNA:   3'- -CGGGg--CGGCCCaGcUCGUCGuCguGG- -5'
11433 3' -62.6 NC_003085.1 + 5838 0.67 0.292033
Target:  5'- aGCCCUGCa-GGUcCGGGacugGGaCGGCACCg -3'
miRNA:   3'- -CGGGGCGgcCCA-GCUCg---UC-GUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 32227 0.67 0.292033
Target:  5'- cGCCCagaGCaCGGGgcgccgCGuGCucaccAGCGGCGCUg -3'
miRNA:   3'- -CGGGg--CG-GCCCa-----GCuCG-----UCGUCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 3430 0.67 0.296968
Target:  5'- cGCgCCUGCUGGaGaacuUCGAGCAGgCgaccacguacgccgAGCACCa -3'
miRNA:   3'- -CG-GGGCGGCC-C----AGCUCGUC-G--------------UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 23349 0.67 0.299102
Target:  5'- aGCgCCGCCGGccGcCGAggcGCAGCcccAGCACUu -3'
miRNA:   3'- -CGgGGCGGCC--CaGCU---CGUCG---UCGUGG- -5'
11433 3' -62.6 NC_003085.1 + 36869 0.67 0.299102
Target:  5'- -aCCCGgUGGuGUCcGGCaccaccaucAGCAGCACCu -3'
miRNA:   3'- cgGGGCgGCC-CAGcUCG---------UCGUCGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.