miRNA display CGI


Results 41 - 60 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11434 3' -59.6 NC_003085.1 + 34082 0.69 0.309939
Target:  5'- cCGcCGCCgaugaGGCGGguucgGUGGCGUCAgggCCACc -3'
miRNA:   3'- -GC-GUGG-----UCGCCg----CACCGCAGUa--GGUG- -5'
11434 3' -59.6 NC_003085.1 + 34340 0.82 0.034693
Target:  5'- uCGCACCAcGCGGCGcGGCGcucCAUCCGCu -3'
miRNA:   3'- -GCGUGGU-CGCCGCaCCGCa--GUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 34504 0.67 0.392114
Target:  5'- gGCACCAcggacgcguGCGGCGacaGCGUCAgcaaCACa -3'
miRNA:   3'- gCGUGGU---------CGCCGCac-CGCAGUag--GUG- -5'
11434 3' -59.6 NC_003085.1 + 34828 0.66 0.428726
Target:  5'- gGCGCUgaccgAGC-GCGUcaagaaGGCGUCAUCCGa -3'
miRNA:   3'- gCGUGG-----UCGcCGCA------CCGCAGUAGGUg -5'
11434 3' -59.6 NC_003085.1 + 35629 0.7 0.267273
Target:  5'- gGCACUucccugGGCGGCGUcugcacgucauGGCGcCAccUCCACg -3'
miRNA:   3'- gCGUGG------UCGCCGCA-----------CCGCaGU--AGGUG- -5'
11434 3' -59.6 NC_003085.1 + 36630 0.66 0.457469
Target:  5'- gGCAUUGGCGGCcaacaGCG-CAUCCGCc -3'
miRNA:   3'- gCGUGGUCGCCGcac--CGCaGUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 36762 0.66 0.446808
Target:  5'- gGcCGCCGGCcucgccgucGGCGUacuccucGGCGUCAUCaucaGCg -3'
miRNA:   3'- gC-GUGGUCG---------CCGCA-------CCGCAGUAGg---UG- -5'
11434 3' -59.6 NC_003085.1 + 36765 1.08 0.00037
Target:  5'- gCGCACCAGCGGCGUGGCGUCAUCCACc -3'
miRNA:   3'- -GCGUGGUCGCCGCACCGCAGUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 36911 0.71 0.201526
Target:  5'- aGCccgGCCAGCGGCGcgGGUGgCAUCCc- -3'
miRNA:   3'- gCG---UGGUCGCCGCa-CCGCaGUAGGug -5'
11434 3' -59.6 NC_003085.1 + 37208 0.72 0.17193
Target:  5'- gGCGCCAGCGGCcuucaauucUGGCGgcccagCcgCCGCg -3'
miRNA:   3'- gCGUGGUCGCCGc--------ACCGCa-----GuaGGUG- -5'
11434 3' -59.6 NC_003085.1 + 37445 0.7 0.24155
Target:  5'- aGCACCGGCaGGUGcgccaGCGUCAggCCGCu -3'
miRNA:   3'- gCGUGGUCG-CCGCac---CGCAGUa-GGUG- -5'
11434 3' -59.6 NC_003085.1 + 38052 0.67 0.380661
Target:  5'- aGCAgCCAccGCGGCG-GuGCGUCAgccggcgguagcgcUCCACc -3'
miRNA:   3'- gCGU-GGU--CGCCGCaC-CGCAGU--------------AGGUG- -5'
11434 3' -59.6 NC_003085.1 + 41001 0.7 0.253502
Target:  5'- gGC-CCAGCGGCGUcgucaucgccgugGGCGUCGcUgGCg -3'
miRNA:   3'- gCGuGGUCGCCGCA-------------CCGCAGUaGgUG- -5'
11434 3' -59.6 NC_003085.1 + 42720 0.66 0.457469
Target:  5'- gGCACCucaGGCGUgGGCGUCGgggCgAUg -3'
miRNA:   3'- gCGUGGucgCCGCA-CCGCAGUa--GgUG- -5'
11434 3' -59.6 NC_003085.1 + 42833 0.67 0.374587
Target:  5'- gGCGCUGGCGGCGc-GCGUCuucgucuccCCACc -3'
miRNA:   3'- gCGUGGUCGCCGCacCGCAGua-------GGUG- -5'
11434 3' -59.6 NC_003085.1 + 43201 0.73 0.162961
Target:  5'- gCGCAUCccacGGCGGCGUcguguaGGCGUCGaCCAUg -3'
miRNA:   3'- -GCGUGG----UCGCCGCA------CCGCAGUaGGUG- -5'
11434 3' -59.6 NC_003085.1 + 43432 0.69 0.287985
Target:  5'- gGUcauCCuggcGCGGCGUccgGGCGUaCAUCCGCg -3'
miRNA:   3'- gCGu--GGu---CGCCGCA---CCGCA-GUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 43883 0.66 0.447772
Target:  5'- cCGCACCAG-GGCGUagacguGGCG-CAccgUCGCg -3'
miRNA:   3'- -GCGUGGUCgCCGCA------CCGCaGUa--GGUG- -5'
11434 3' -59.6 NC_003085.1 + 45265 0.75 0.120791
Target:  5'- gCGCGUCAGCGGCGUccuGCGUCugcUCCACc -3'
miRNA:   3'- -GCGUGGUCGCCGCAc--CGCAGu--AGGUG- -5'
11434 3' -59.6 NC_003085.1 + 45363 0.68 0.357598
Target:  5'- gCGCccaacuCCAGCGGCGagugcgGGCG-C-UCCACc -3'
miRNA:   3'- -GCGu-----GGUCGCCGCa-----CCGCaGuAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.