miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11434 3' -59.6 NC_003085.1 + 22072 0.71 0.217924
Target:  5'- gGUACCAcGCGcGCGcGGUGUCGcguUCCACc -3'
miRNA:   3'- gCGUGGU-CGC-CGCaCCGCAGU---AGGUG- -5'
11434 3' -59.6 NC_003085.1 + 24131 0.74 0.127619
Target:  5'- gCGCGCCauccaccuugucGGUGGCcaccacGGCGUCGUCCACc -3'
miRNA:   3'- -GCGUGG------------UCGCCGca----CCGCAGUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 24257 0.66 0.438189
Target:  5'- gGUACCAGCcguacugcucGGCGacguUGGCGcUCAUcgCCACc -3'
miRNA:   3'- gCGUGGUCG----------CCGC----ACCGC-AGUA--GGUG- -5'
11434 3' -59.6 NC_003085.1 + 24857 0.66 0.438189
Target:  5'- aGCACCuggAGCGaGU-UGGaguaCGUCGUCCACg -3'
miRNA:   3'- gCGUGG---UCGC-CGcACC----GCAGUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 25238 0.74 0.130092
Target:  5'- gGCGCCGcccuggugcgcuccGCGGCG-GGCGUCGUCguCg -3'
miRNA:   3'- gCGUGGU--------------CGCCGCaCCGCAGUAGguG- -5'
11434 3' -59.6 NC_003085.1 + 26122 0.67 0.389451
Target:  5'- gGCgGCCGGCGGCGcUuggccggccagagcGGCGUCAagcaucUCCAg -3'
miRNA:   3'- gCG-UGGUCGCCGC-A--------------CCGCAGU------AGGUg -5'
11434 3' -59.6 NC_003085.1 + 26697 0.79 0.059861
Target:  5'- cCGuCGCCAccGCGGCG-GGCGUCGUCgGCg -3'
miRNA:   3'- -GC-GUGGU--CGCCGCaCCGCAGUAGgUG- -5'
11434 3' -59.6 NC_003085.1 + 27383 0.7 0.260641
Target:  5'- uGCGCCucuuccgcGGCGGCGaUGGCcUUGUCCAa -3'
miRNA:   3'- gCGUGG--------UCGCCGC-ACCGcAGUAGGUg -5'
11434 3' -59.6 NC_003085.1 + 27923 0.68 0.333144
Target:  5'- uCGCGCCGGUaGUcacgcagGGCGUCAgcgCCGCg -3'
miRNA:   3'- -GCGUGGUCGcCGca-----CCGCAGUa--GGUG- -5'
11434 3' -59.6 NC_003085.1 + 28506 0.71 0.223062
Target:  5'- gCGCGCCAuucagGCGGUGgacGCGUCAgggcgaaUCCGCg -3'
miRNA:   3'- -GCGUGGU-----CGCCGCac-CGCAGU-------AGGUG- -5'
11434 3' -59.6 NC_003085.1 + 28606 0.71 0.223639
Target:  5'- -aCGCCGGUGGUGUGGCGcUCG-CUGCu -3'
miRNA:   3'- gcGUGGUCGCCGCACCGC-AGUaGGUG- -5'
11434 3' -59.6 NC_003085.1 + 28612 0.71 0.229481
Target:  5'- gGCACCgcAGCGGCGagcucGGCGccggucgccUCAUCCAg -3'
miRNA:   3'- gCGUGG--UCGCCGCa----CCGC---------AGUAGGUg -5'
11434 3' -59.6 NC_003085.1 + 29120 0.66 0.438189
Target:  5'- cCGCGCUgaGGCGcCGUGGCccagaguUCAUCCAg -3'
miRNA:   3'- -GCGUGG--UCGCcGCACCGc------AGUAGGUg -5'
11434 3' -59.6 NC_003085.1 + 29210 0.68 0.31984
Target:  5'- gGCACCAGCgacugcgccaccugGGCGaaggUGGCGacguaccggaaggCGUCCGCg -3'
miRNA:   3'- gCGUGGUCG--------------CCGC----ACCGCa------------GUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 29425 0.66 0.438189
Target:  5'- gGCGCgGGCGGCGgcaaUGcCGUCcUCCAg -3'
miRNA:   3'- gCGUGgUCGCCGC----ACcGCAGuAGGUg -5'
11434 3' -59.6 NC_003085.1 + 29526 0.7 0.24155
Target:  5'- gCGuCACCAGCgucuuGGCGcgGGCGUCGUgCgGCa -3'
miRNA:   3'- -GC-GUGGUCG-----CCGCa-CCGCAGUA-GgUG- -5'
11434 3' -59.6 NC_003085.1 + 30002 0.69 0.29444
Target:  5'- aGCcCCAGUGGcCGgugugccacggguUGGUGUCcAUCCACa -3'
miRNA:   3'- gCGuGGUCGCC-GC-------------ACCGCAG-UAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 30003 0.7 0.260641
Target:  5'- aGCgGCCcugGGCGGCcuUGGCGacgUCGUCCGCg -3'
miRNA:   3'- gCG-UGG---UCGCCGc-ACCGC---AGUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 31663 0.66 0.428726
Target:  5'- gGCACCggggcgGGCGGUGgauguggGGUGUCAUgaGCg -3'
miRNA:   3'- gCGUGG------UCGCCGCa------CCGCAGUAggUG- -5'
11434 3' -59.6 NC_003085.1 + 33191 0.67 0.401075
Target:  5'- uCGCGCCAGUaGCG-GGCGUCcuggaggCgGCg -3'
miRNA:   3'- -GCGUGGUCGcCGCaCCGCAGua-----GgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.