miRNA display CGI


Results 21 - 40 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11434 3' -59.6 NC_003085.1 + 37445 0.7 0.24155
Target:  5'- aGCACCGGCaGGUGcgccaGCGUCAggCCGCu -3'
miRNA:   3'- gCGUGGUCG-CCGCac---CGCAGUa-GGUG- -5'
11434 3' -59.6 NC_003085.1 + 41001 0.7 0.253502
Target:  5'- gGC-CCAGCGGCGUcgucaucgccgugGGCGUCGcUgGCg -3'
miRNA:   3'- gCGuGGUCGCCGCA-------------CCGCAGUaGgUG- -5'
11434 3' -59.6 NC_003085.1 + 27383 0.7 0.260641
Target:  5'- uGCGCCucuuccgcGGCGGCGaUGGCcUUGUCCAa -3'
miRNA:   3'- gCGUGG--------UCGCCGC-ACCGcAGUAGGUg -5'
11434 3' -59.6 NC_003085.1 + 30003 0.7 0.260641
Target:  5'- aGCgGCCcugGGCGGCcuUGGCGacgUCGUCCGCg -3'
miRNA:   3'- gCG-UGG---UCGCCGc-ACCGC---AGUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 19338 0.7 0.260641
Target:  5'- gGgGCCGGCGGCGgaUGGCGUCcgUg-- -3'
miRNA:   3'- gCgUGGUCGCCGC--ACCGCAGuaGgug -5'
11434 3' -59.6 NC_003085.1 + 35629 0.7 0.267273
Target:  5'- gGCACUucccugGGCGGCGUcugcacgucauGGCGcCAccUCCACg -3'
miRNA:   3'- gCGUGG------UCGCCGCA-----------CCGCaGU--AGGUG- -5'
11434 3' -59.6 NC_003085.1 + 6079 0.69 0.27404
Target:  5'- uGCACCAGCGGCcccagGGaGUCcUCCGu -3'
miRNA:   3'- gCGUGGUCGCCGca---CCgCAGuAGGUg -5'
11434 3' -59.6 NC_003085.1 + 11571 0.69 0.287985
Target:  5'- aGCGCCGuCGGCGUGGUGc---CCACc -3'
miRNA:   3'- gCGUGGUcGCCGCACCGCaguaGGUG- -5'
11434 3' -59.6 NC_003085.1 + 43432 0.69 0.287985
Target:  5'- gGUcauCCuggcGCGGCGUccgGGCGUaCAUCCGCg -3'
miRNA:   3'- gCGu--GGu---CGCCGCA---CCGCA-GUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 30002 0.69 0.29444
Target:  5'- aGCcCCAGUGGcCGgugugccacggguUGGUGUCcAUCCACa -3'
miRNA:   3'- gCGuGGUCGCC-GC-------------ACCGCAG-UAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 34082 0.69 0.309939
Target:  5'- cCGcCGCCgaugaGGCGGguucgGUGGCGUCAgggCCACc -3'
miRNA:   3'- -GC-GUGG-----UCGCCg----CACCGCAGUa--GGUG- -5'
11434 3' -59.6 NC_003085.1 + 29210 0.68 0.31984
Target:  5'- gGCACCAGCgacugcgccaccugGGCGaaggUGGCGacguaccggaaggCGUCCGCg -3'
miRNA:   3'- gCGUGGUCG--------------CCGC----ACCGCa------------GUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 27923 0.68 0.333144
Target:  5'- uCGCGCCGGUaGUcacgcagGGCGUCAgcgCCGCg -3'
miRNA:   3'- -GCGUGGUCGcCGca-----CCGCAGUa--GGUG- -5'
11434 3' -59.6 NC_003085.1 + 8516 0.68 0.333144
Target:  5'- gCGCACCAGCgGGCGcaGGCGaaggCGgugacgCCAUg -3'
miRNA:   3'- -GCGUGGUCG-CCGCa-CCGCa---GUa-----GGUG- -5'
11434 3' -59.6 NC_003085.1 + 47884 0.68 0.348487
Target:  5'- aGCGCguGCGGCcugcucucugccaGUGucaGCGUCGUCuCGCa -3'
miRNA:   3'- gCGUGguCGCCG-------------CAC---CGCAGUAG-GUG- -5'
11434 3' -59.6 NC_003085.1 + 21105 0.68 0.356763
Target:  5'- cCGCGCCacGGCGGUGccgcggaUGGCGauagccaaAUCCACu -3'
miRNA:   3'- -GCGUGG--UCGCCGC-------ACCGCag------UAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 45363 0.68 0.357598
Target:  5'- gCGCccaacuCCAGCGGCGagugcgGGCG-C-UCCACc -3'
miRNA:   3'- -GCGu-----GGUCGCCGCa-----CCGCaGuAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 11457 0.68 0.357598
Target:  5'- gGgGCCGacGCGGUGUGaGCGUCccaCCACc -3'
miRNA:   3'- gCgUGGU--CGCCGCAC-CGCAGua-GGUG- -5'
11434 3' -59.6 NC_003085.1 + 42833 0.67 0.374587
Target:  5'- gGCGCUGGCGGCGc-GCGUCuucgucuccCCACc -3'
miRNA:   3'- gCGUGGUCGCCGCacCGCAGua-------GGUG- -5'
11434 3' -59.6 NC_003085.1 + 2014 0.67 0.374587
Target:  5'- aGCGgauGCGGCGUGGCG-CGauguguUCCACc -3'
miRNA:   3'- gCGUgguCGCCGCACCGCaGU------AGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.