Results 21 - 40 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11434 | 3' | -59.6 | NC_003085.1 | + | 47991 | 0.67 | 0.401075 |
Target: 5'- gGUgACgGGCGGCGacuuggGGUGUCAUgCGCu -3' miRNA: 3'- gCG-UGgUCGCCGCa-----CCGCAGUAgGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 33191 | 0.67 | 0.401075 |
Target: 5'- uCGCGCCAGUaGCG-GGCGUCcuggaggCgGCg -3' miRNA: 3'- -GCGUGGUCGcCGCaCCGCAGua-----GgUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 34504 | 0.67 | 0.392114 |
Target: 5'- gGCACCAcggacgcguGCGGCGacaGCGUCAgcaaCACa -3' miRNA: 3'- gCGUGGU---------CGCCGCac-CGCAGUag--GUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 9078 | 0.67 | 0.392114 |
Target: 5'- uGCcgGCCAGCGccaGaGGCGUCAgcgCCGCg -3' miRNA: 3'- gCG--UGGUCGCcg-CaCCGCAGUa--GGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 873 | 0.67 | 0.392114 |
Target: 5'- uCGCGCCuuccCGGCgGUGGCGUCcgaggggcAUCC-Cg -3' miRNA: 3'- -GCGUGGuc--GCCG-CACCGCAG--------UAGGuG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 26122 | 0.67 | 0.389451 |
Target: 5'- gGCgGCCGGCGGCGcUuggccggccagagcGGCGUCAagcaucUCCAg -3' miRNA: 3'- gCG-UGGUCGCCGC-A--------------CCGCAGU------AGGUg -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 38052 | 0.67 | 0.380661 |
Target: 5'- aGCAgCCAccGCGGCG-GuGCGUCAgccggcgguagcgcUCCACc -3' miRNA: 3'- gCGU-GGU--CGCCGCaC-CGCAGU--------------AGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 2014 | 0.67 | 0.374587 |
Target: 5'- aGCGgauGCGGCGUGGCG-CGauguguUCCACc -3' miRNA: 3'- gCGUgguCGCCGCACCGCaGU------AGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 42833 | 0.67 | 0.374587 |
Target: 5'- gGCGCUGGCGGCGc-GCGUCuucgucuccCCACc -3' miRNA: 3'- gCGUGGUCGCCGCacCGCAGua-------GGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 11457 | 0.68 | 0.357598 |
Target: 5'- gGgGCCGacGCGGUGUGaGCGUCccaCCACc -3' miRNA: 3'- gCgUGGU--CGCCGCAC-CGCAGua-GGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 45363 | 0.68 | 0.357598 |
Target: 5'- gCGCccaacuCCAGCGGCGagugcgGGCG-C-UCCACc -3' miRNA: 3'- -GCGu-----GGUCGCCGCa-----CCGCaGuAGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 21105 | 0.68 | 0.356763 |
Target: 5'- cCGCGCCacGGCGGUGccgcggaUGGCGauagccaaAUCCACu -3' miRNA: 3'- -GCGUGG--UCGCCGC-------ACCGCag------UAGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 47884 | 0.68 | 0.348487 |
Target: 5'- aGCGCguGCGGCcugcucucugccaGUGucaGCGUCGUCuCGCa -3' miRNA: 3'- gCGUGguCGCCG-------------CAC---CGCAGUAG-GUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 8516 | 0.68 | 0.333144 |
Target: 5'- gCGCACCAGCgGGCGcaGGCGaaggCGgugacgCCAUg -3' miRNA: 3'- -GCGUGGUCG-CCGCa-CCGCa---GUa-----GGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 27923 | 0.68 | 0.333144 |
Target: 5'- uCGCGCCGGUaGUcacgcagGGCGUCAgcgCCGCg -3' miRNA: 3'- -GCGUGGUCGcCGca-----CCGCAGUa--GGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 29210 | 0.68 | 0.31984 |
Target: 5'- gGCACCAGCgacugcgccaccugGGCGaaggUGGCGacguaccggaaggCGUCCGCg -3' miRNA: 3'- gCGUGGUCG--------------CCGC----ACCGCa------------GUAGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 34082 | 0.69 | 0.309939 |
Target: 5'- cCGcCGCCgaugaGGCGGguucgGUGGCGUCAgggCCACc -3' miRNA: 3'- -GC-GUGG-----UCGCCg----CACCGCAGUa--GGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 30002 | 0.69 | 0.29444 |
Target: 5'- aGCcCCAGUGGcCGgugugccacggguUGGUGUCcAUCCACa -3' miRNA: 3'- gCGuGGUCGCC-GC-------------ACCGCAG-UAGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 43432 | 0.69 | 0.287985 |
Target: 5'- gGUcauCCuggcGCGGCGUccgGGCGUaCAUCCGCg -3' miRNA: 3'- gCGu--GGu---CGCCGCA---CCGCA-GUAGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 11571 | 0.69 | 0.287985 |
Target: 5'- aGCGCCGuCGGCGUGGUGc---CCACc -3' miRNA: 3'- gCGUGGUcGCCGCACCGCaguaGGUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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