Results 41 - 60 of 67 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11434 | 3' | -59.6 | NC_003085.1 | + | 6079 | 0.69 | 0.27404 |
Target: 5'- uGCACCAGCGGCcccagGGaGUCcUCCGu -3' miRNA: 3'- gCGUGGUCGCCGca---CCgCAGuAGGUg -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 35629 | 0.7 | 0.267273 |
Target: 5'- gGCACUucccugGGCGGCGUcugcacgucauGGCGcCAccUCCACg -3' miRNA: 3'- gCGUGG------UCGCCGCA-----------CCGCaGU--AGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 19338 | 0.7 | 0.260641 |
Target: 5'- gGgGCCGGCGGCGgaUGGCGUCcgUg-- -3' miRNA: 3'- gCgUGGUCGCCGC--ACCGCAGuaGgug -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 27383 | 0.7 | 0.260641 |
Target: 5'- uGCGCCucuuccgcGGCGGCGaUGGCcUUGUCCAa -3' miRNA: 3'- gCGUGG--------UCGCCGC-ACCGcAGUAGGUg -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 30003 | 0.7 | 0.260641 |
Target: 5'- aGCgGCCcugGGCGGCcuUGGCGacgUCGUCCGCg -3' miRNA: 3'- gCG-UGG---UCGCCGc-ACCGC---AGUAGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 41001 | 0.7 | 0.253502 |
Target: 5'- gGC-CCAGCGGCGUcgucaucgccgugGGCGUCGcUgGCg -3' miRNA: 3'- gCGuGGUCGCCGCA-------------CCGCAGUaGgUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 29526 | 0.7 | 0.24155 |
Target: 5'- gCGuCACCAGCgucuuGGCGcgGGCGUCGUgCgGCa -3' miRNA: 3'- -GC-GUGGUCG-----CCGCa-CCGCAGUA-GgUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 37445 | 0.7 | 0.24155 |
Target: 5'- aGCACCGGCaGGUGcgccaGCGUCAggCCGCu -3' miRNA: 3'- gCGUGGUCG-CCGCac---CGCAGUa-GGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 14916 | 0.7 | 0.235451 |
Target: 5'- gCGCACCGGCcgccagcGCGUGGCG-C-UCCAa -3' miRNA: 3'- -GCGUGGUCGc------CGCACCGCaGuAGGUg -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 28612 | 0.71 | 0.229481 |
Target: 5'- gGCACCgcAGCGGCGagcucGGCGccggucgccUCAUCCAg -3' miRNA: 3'- gCGUGG--UCGCCGCa----CCGC---------AGUAGGUg -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 28606 | 0.71 | 0.223639 |
Target: 5'- -aCGCCGGUGGUGUGGCGcUCG-CUGCu -3' miRNA: 3'- gcGUGGUCGCCGCACCGC-AGUaGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 28506 | 0.71 | 0.223062 |
Target: 5'- gCGCGCCAuucagGCGGUGgacGCGUCAgggcgaaUCCGCg -3' miRNA: 3'- -GCGUGGU-----CGCCGCac-CGCAGU-------AGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 22072 | 0.71 | 0.217924 |
Target: 5'- gGUACCAcGCGcGCGcGGUGUCGcguUCCACc -3' miRNA: 3'- gCGUGGU-CGC-CGCaCCGCAGU---AGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 21358 | 0.71 | 0.206869 |
Target: 5'- gCGCGCCAuCcGCGUGGUGggCGUCUACg -3' miRNA: 3'- -GCGUGGUcGcCGCACCGCa-GUAGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 36911 | 0.71 | 0.201526 |
Target: 5'- aGCccgGCCAGCGGCGcgGGUGgCAUCCc- -3' miRNA: 3'- gCG---UGGUCGCCGCa-CCGCaGUAGGug -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 48399 | 0.71 | 0.199946 |
Target: 5'- aGCGCCgcauugucugccucGGCGGCGcUGGCuUCcUCCGCa -3' miRNA: 3'- gCGUGG--------------UCGCCGC-ACCGcAGuAGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 15626 | 0.72 | 0.181338 |
Target: 5'- uGgGCCGGUGGcCG-GGCGgagagCGUCCACa -3' miRNA: 3'- gCgUGGUCGCC-GCaCCGCa----GUAGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 37208 | 0.72 | 0.17193 |
Target: 5'- gGCGCCAGCGGCcuucaauucUGGCGgcccagCcgCCGCg -3' miRNA: 3'- gCGUGGUCGCCGc--------ACCGCa-----GuaGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 43201 | 0.73 | 0.162961 |
Target: 5'- gCGCAUCccacGGCGGCGUcguguaGGCGUCGaCCAUg -3' miRNA: 3'- -GCGUGG----UCGCCGCA------CCGCAGUaGGUG- -5' |
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11434 | 3' | -59.6 | NC_003085.1 | + | 25238 | 0.74 | 0.130092 |
Target: 5'- gGCGCCGcccuggugcgcuccGCGGCG-GGCGUCGUCguCg -3' miRNA: 3'- gCGUGGU--------------CGCCGCaCCGCAGUAGguG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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