miRNA display CGI


Results 1 - 20 of 67 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11434 3' -59.6 NC_003085.1 + 48726 0.66 0.451637
Target:  5'- aGCACCucucgccuguccgugAGCGGC---GCGUCAggcgCCACg -3'
miRNA:   3'- gCGUGG---------------UCGCCGcacCGCAGUa---GGUG- -5'
11434 3' -59.6 NC_003085.1 + 48691 0.79 0.054949
Target:  5'- gCGCACCGuugcGCGGCGUGGCGgacUCGcCCACc -3'
miRNA:   3'- -GCGUGGU----CGCCGCACCGC---AGUaGGUG- -5'
11434 3' -59.6 NC_003085.1 + 48399 0.71 0.199946
Target:  5'- aGCGCCgcauugucugccucGGCGGCGcUGGCuUCcUCCGCa -3'
miRNA:   3'- gCGUGG--------------UCGCCGC-ACCGcAGuAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 47991 0.67 0.401075
Target:  5'- gGUgACgGGCGGCGacuuggGGUGUCAUgCGCu -3'
miRNA:   3'- gCG-UGgUCGCCGCa-----CCGCAGUAgGUG- -5'
11434 3' -59.6 NC_003085.1 + 47884 0.68 0.348487
Target:  5'- aGCGCguGCGGCcugcucucugccaGUGucaGCGUCGUCuCGCa -3'
miRNA:   3'- gCGUGguCGCCG-------------CAC---CGCAGUAG-GUG- -5'
11434 3' -59.6 NC_003085.1 + 45763 0.66 0.438189
Target:  5'- -cCACCAGCaccGGaCGcGGCGUCAggacucgCCGCg -3'
miRNA:   3'- gcGUGGUCG---CC-GCaCCGCAGUa------GGUG- -5'
11434 3' -59.6 NC_003085.1 + 45408 0.67 0.409251
Target:  5'- aGCGCCGucagcgaaagcauGgGGCGcggUGGCGUCGUCacgGCa -3'
miRNA:   3'- gCGUGGU-------------CgCCGC---ACCGCAGUAGg--UG- -5'
11434 3' -59.6 NC_003085.1 + 45363 0.68 0.357598
Target:  5'- gCGCccaacuCCAGCGGCGagugcgGGCG-C-UCCACc -3'
miRNA:   3'- -GCGu-----GGUCGCCGCa-----CCGCaGuAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 45265 0.75 0.120791
Target:  5'- gCGCGUCAGCGGCGUccuGCGUCugcUCCACc -3'
miRNA:   3'- -GCGUGGUCGCCGCAc--CGCAGu--AGGUG- -5'
11434 3' -59.6 NC_003085.1 + 43883 0.66 0.447772
Target:  5'- cCGCACCAG-GGCGUagacguGGCG-CAccgUCGCg -3'
miRNA:   3'- -GCGUGGUCgCCGCA------CCGCaGUa--GGUG- -5'
11434 3' -59.6 NC_003085.1 + 43432 0.69 0.287985
Target:  5'- gGUcauCCuggcGCGGCGUccgGGCGUaCAUCCGCg -3'
miRNA:   3'- gCGu--GGu---CGCCGCA---CCGCA-GUAGGUG- -5'
11434 3' -59.6 NC_003085.1 + 43201 0.73 0.162961
Target:  5'- gCGCAUCccacGGCGGCGUcguguaGGCGUCGaCCAUg -3'
miRNA:   3'- -GCGUGG----UCGCCGCA------CCGCAGUaGGUG- -5'
11434 3' -59.6 NC_003085.1 + 42833 0.67 0.374587
Target:  5'- gGCGCUGGCGGCGc-GCGUCuucgucuccCCACc -3'
miRNA:   3'- gCGUGGUCGCCGCacCGCAGua-------GGUG- -5'
11434 3' -59.6 NC_003085.1 + 42720 0.66 0.457469
Target:  5'- gGCACCucaGGCGUgGGCGUCGgggCgAUg -3'
miRNA:   3'- gCGUGGucgCCGCA-CCGCAGUa--GgUG- -5'
11434 3' -59.6 NC_003085.1 + 41001 0.7 0.253502
Target:  5'- gGC-CCAGCGGCGUcgucaucgccgugGGCGUCGcUgGCg -3'
miRNA:   3'- gCGuGGUCGCCGCA-------------CCGCAGUaGgUG- -5'
11434 3' -59.6 NC_003085.1 + 38052 0.67 0.380661
Target:  5'- aGCAgCCAccGCGGCG-GuGCGUCAgccggcgguagcgcUCCACc -3'
miRNA:   3'- gCGU-GGU--CGCCGCaC-CGCAGU--------------AGGUG- -5'
11434 3' -59.6 NC_003085.1 + 37445 0.7 0.24155
Target:  5'- aGCACCGGCaGGUGcgccaGCGUCAggCCGCu -3'
miRNA:   3'- gCGUGGUCG-CCGCac---CGCAGUa-GGUG- -5'
11434 3' -59.6 NC_003085.1 + 37208 0.72 0.17193
Target:  5'- gGCGCCAGCGGCcuucaauucUGGCGgcccagCcgCCGCg -3'
miRNA:   3'- gCGUGGUCGCCGc--------ACCGCa-----GuaGGUG- -5'
11434 3' -59.6 NC_003085.1 + 36911 0.71 0.201526
Target:  5'- aGCccgGCCAGCGGCGcgGGUGgCAUCCc- -3'
miRNA:   3'- gCG---UGGUCGCCGCa-CCGCaGUAGGug -5'
11434 3' -59.6 NC_003085.1 + 36765 1.08 0.00037
Target:  5'- gCGCACCAGCGGCGUGGCGUCAUCCACc -3'
miRNA:   3'- -GCGUGGUCGCCGCACCGCAGUAGGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.