Results 1 - 20 of 35 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 48133 | 0.67 | 0.536301 |
Target: 5'- cAGcAGUCugGGcugccuccuccAGCgcggcgUCGCGCUCACGCu -3' miRNA: 3'- -UCaUCAGugUC-----------UCG------GGCGCGAGUGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 46839 | 0.77 | 0.129745 |
Target: 5'- gGGUAG-CugGGAGCCaGCGCUC-CGCu -3' miRNA: 3'- -UCAUCaGugUCUCGGgCGCGAGuGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 46026 | 0.68 | 0.463632 |
Target: 5'- aGGgcauGUCAguGGGCuCUGCGCauccgCGCGCg -3' miRNA: 3'- -UCau--CAGUguCUCG-GGCGCGa----GUGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 45699 | 0.76 | 0.161943 |
Target: 5'- --gAGUCACGGAGCaCUGCGUagACGCc -3' miRNA: 3'- ucaUCAGUGUCUCG-GGCGCGagUGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 44184 | 0.66 | 0.601524 |
Target: 5'- ---cGUCuucuucGCCCGUGCUCGCGUa -3' miRNA: 3'- ucauCAGugucu-CGGGCGCGAGUGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 43910 | 0.66 | 0.623565 |
Target: 5'- ---cGUCGCGGcgccaGGCCCuuuGCGCgcacuUCGCGCa -3' miRNA: 3'- ucauCAGUGUC-----UCGGG---CGCG-----AGUGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 43827 | 0.72 | 0.282328 |
Target: 5'- --aAGUCACAGGGCgaGCGCUC-CaGCa -3' miRNA: 3'- ucaUCAGUGUCUCGggCGCGAGuG-CG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 38579 | 0.7 | 0.387375 |
Target: 5'- cGUAGUCGCuGAGCCgcuucaacUGCGUccaGCGCa -3' miRNA: 3'- uCAUCAGUGuCUCGG--------GCGCGag-UGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 37917 | 0.66 | 0.601524 |
Target: 5'- -uUGG-CGCAG-GCCCcgGCGCUCgacgaACGCg -3' miRNA: 3'- ucAUCaGUGUCuCGGG--CGCGAG-----UGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 36341 | 1.12 | 0.000388 |
Target: 5'- cAGUAGUCACAGAGCCCGCGCUCACGCa -3' miRNA: 3'- -UCAUCAGUGUCUCGGGCGCGAGUGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 34836 | 0.66 | 0.612536 |
Target: 5'- uGGgcGUCACAcAGCCCaugaGCUUcgACGCg -3' miRNA: 3'- -UCauCAGUGUcUCGGGcg--CGAG--UGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 32892 | 0.73 | 0.268327 |
Target: 5'- gGGUcGUCGCAGuGGCCgGgCGC-CACGCa -3' miRNA: 3'- -UCAuCAGUGUC-UCGGgC-GCGaGUGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 32233 | 0.67 | 0.56868 |
Target: 5'- --gAG-CACGGGGCgCCGCguGCUCACcaGCg -3' miRNA: 3'- ucaUCaGUGUCUCG-GGCG--CGAGUG--CG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 31517 | 0.75 | 0.185568 |
Target: 5'- aGGUGGccccaGCAGAGCCCagaGCGC-CGCGCu -3' miRNA: 3'- -UCAUCag---UGUCUCGGG---CGCGaGUGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 30519 | 0.68 | 0.515074 |
Target: 5'- ---cGUCgGCGGGGCCCuguaggcgaugGCGCUCAUGg -3' miRNA: 3'- ucauCAG-UGUCUCGGG-----------CGCGAGUGCg -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 28945 | 0.66 | 0.623565 |
Target: 5'- cGUcaugCGCGGAG-UCGCGCUCGuCGCg -3' miRNA: 3'- uCAuca-GUGUCUCgGGCGCGAGU-GCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 28036 | 0.67 | 0.56868 |
Target: 5'- cGgcGUCcuccuguCGGAGCCgaGCGCcuUCACGCc -3' miRNA: 3'- uCauCAGu------GUCUCGGg-CGCG--AGUGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 27908 | 0.73 | 0.254891 |
Target: 5'- aGGgcGUC-CAcGAGCUCGCGCcgguagUCACGCa -3' miRNA: 3'- -UCauCAGuGU-CUCGGGCGCG------AGUGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 27850 | 0.66 | 0.601524 |
Target: 5'- cGUcucgCGCGGGucGCUCGCGC-CACGCa -3' miRNA: 3'- uCAuca-GUGUCU--CGGGCGCGaGUGCG- -5' |
|||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 27127 | 0.68 | 0.473712 |
Target: 5'- cGUcGUCGCAGAcGCCCacgcagGUGCUCACc- -3' miRNA: 3'- uCAuCAGUGUCU-CGGG------CGCGAGUGcg -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home