miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11435 5' -56.4 NC_003085.1 + 7044 0.69 0.424482
Target:  5'- gGGUGGgcgauGAGCCCGCGCgaaaggccCAUGCu -3'
miRNA:   3'- -UCAUCaguguCUCGGGCGCGa-------GUGCG- -5'
11435 5' -56.4 NC_003085.1 + 7064 0.77 0.133049
Target:  5'- ---cGUCAUGGAcgaggaggacaagGCCCGCGCUCAUGCc -3'
miRNA:   3'- ucauCAGUGUCU-------------CGGGCGCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 8607 0.7 0.377551
Target:  5'- cGUGGUgACGGAGaaggaauCCCGCGUcCugGCc -3'
miRNA:   3'- uCAUCAgUGUCUC-------GGGCGCGaGugCG- -5'
11435 5' -56.4 NC_003085.1 + 9154 0.66 0.634602
Target:  5'- ------gGCGGAGCUCGcCGC-CGCGCa -3'
miRNA:   3'- ucaucagUGUCUCGGGC-GCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 9812 0.7 0.387375
Target:  5'- gAGUGGuUCAggcCAGAGCCCGaguugcuguCGUUCAuCGCg -3'
miRNA:   3'- -UCAUC-AGU---GUCUCGGGC---------GCGAGU-GCG- -5'
11435 5' -56.4 NC_003085.1 + 11172 0.77 0.14503
Target:  5'- ---cGUCACAGgcaaAGCCCGaGCUCGCGCc -3'
miRNA:   3'- ucauCAGUGUC----UCGGGCgCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 11284 0.66 0.590538
Target:  5'- gAGUGGgcccggcuuCGGaAGCgCGCGCUgGCGCu -3'
miRNA:   3'- -UCAUCagu------GUC-UCGgGCGCGAgUGCG- -5'
11435 5' -56.4 NC_003085.1 + 12019 0.71 0.344096
Target:  5'- cGGUGGcgggCGCGGGGUUgGCGCUCGCu- -3'
miRNA:   3'- -UCAUCa---GUGUCUCGGgCGCGAGUGcg -5'
11435 5' -56.4 NC_003085.1 + 16171 0.75 0.201163
Target:  5'- uGUGGUCGauugcCAGGGCCCucugacagguaCGCUCGCGCg -3'
miRNA:   3'- uCAUCAGU-----GUCUCGGGc----------GCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 17917 0.66 0.612536
Target:  5'- cGUAG--ACGGGuGCCUGCGCccaGCGCg -3'
miRNA:   3'- uCAUCagUGUCU-CGGGCGCGag-UGCG- -5'
11435 5' -56.4 NC_003085.1 + 20754 0.67 0.525648
Target:  5'- --aAG-CGCAGGGCCaGCGCgcagcucCGCGCg -3'
miRNA:   3'- ucaUCaGUGUCUCGGgCGCGa------GUGCG- -5'
11435 5' -56.4 NC_003085.1 + 24537 0.75 0.185568
Target:  5'- uGUGGUCGCGGuGCgUGCGCg-GCGCg -3'
miRNA:   3'- uCAUCAGUGUCuCGgGCGCGagUGCG- -5'
11435 5' -56.4 NC_003085.1 + 24911 0.67 0.56868
Target:  5'- --aGGUCAgGcauGUCCGCGC-CGCGCa -3'
miRNA:   3'- ucaUCAGUgUcu-CGGGCGCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 24911 0.66 0.601524
Target:  5'- ----aUCGCcGAGUaacaGCGCUCGCGCa -3'
miRNA:   3'- ucaucAGUGuCUCGgg--CGCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 27006 0.72 0.275256
Target:  5'- gAGUGGUgCACGG-GCCuuggugugccugCGCGCUCgACGCu -3'
miRNA:   3'- -UCAUCA-GUGUCuCGG------------GCGCGAG-UGCG- -5'
11435 5' -56.4 NC_003085.1 + 27127 0.68 0.473712
Target:  5'- cGUcGUCGCAGAcGCCCacgcagGUGCUCACc- -3'
miRNA:   3'- uCAuCAGUGUCU-CGGG------CGCGAGUGcg -5'
11435 5' -56.4 NC_003085.1 + 27850 0.66 0.601524
Target:  5'- cGUcucgCGCGGGucGCUCGCGC-CACGCa -3'
miRNA:   3'- uCAuca-GUGUCU--CGGGCGCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 27908 0.73 0.254891
Target:  5'- aGGgcGUC-CAcGAGCUCGCGCcgguagUCACGCa -3'
miRNA:   3'- -UCauCAGuGU-CUCGGGCGCG------AGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 28036 0.67 0.56868
Target:  5'- cGgcGUCcuccuguCGGAGCCgaGCGCcuUCACGCc -3'
miRNA:   3'- uCauCAGu------GUCUCGGg-CGCG--AGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 28945 0.66 0.623565
Target:  5'- cGUcaugCGCGGAG-UCGCGCUCGuCGCg -3'
miRNA:   3'- uCAuca-GUGUCUCgGGCGCGAGU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.