miRNA display CGI


Results 21 - 35 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11435 5' -56.4 NC_003085.1 + 30519 0.68 0.515074
Target:  5'- ---cGUCgGCGGGGCCCuguaggcgaugGCGCUCAUGg -3'
miRNA:   3'- ucauCAG-UGUCUCGGG-----------CGCGAGUGCg -5'
11435 5' -56.4 NC_003085.1 + 31517 0.75 0.185568
Target:  5'- aGGUGGccccaGCAGAGCCCagaGCGC-CGCGCu -3'
miRNA:   3'- -UCAUCag---UGUCUCGGG---CGCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 32233 0.67 0.56868
Target:  5'- --gAG-CACGGGGCgCCGCguGCUCACcaGCg -3'
miRNA:   3'- ucaUCaGUGUCUCG-GGCG--CGAGUG--CG- -5'
11435 5' -56.4 NC_003085.1 + 32892 0.73 0.268327
Target:  5'- gGGUcGUCGCAGuGGCCgGgCGC-CACGCa -3'
miRNA:   3'- -UCAuCAGUGUC-UCGGgC-GCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 34836 0.66 0.612536
Target:  5'- uGGgcGUCACAcAGCCCaugaGCUUcgACGCg -3'
miRNA:   3'- -UCauCAGUGUcUCGGGcg--CGAG--UGCG- -5'
11435 5' -56.4 NC_003085.1 + 36341 1.12 0.000388
Target:  5'- cAGUAGUCACAGAGCCCGCGCUCACGCa -3'
miRNA:   3'- -UCAUCAGUGUCUCGGGCGCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 37917 0.66 0.601524
Target:  5'- -uUGG-CGCAG-GCCCcgGCGCUCgacgaACGCg -3'
miRNA:   3'- ucAUCaGUGUCuCGGG--CGCGAG-----UGCG- -5'
11435 5' -56.4 NC_003085.1 + 38579 0.7 0.387375
Target:  5'- cGUAGUCGCuGAGCCgcuucaacUGCGUccaGCGCa -3'
miRNA:   3'- uCAUCAGUGuCUCGG--------GCGCGag-UGCG- -5'
11435 5' -56.4 NC_003085.1 + 43827 0.72 0.282328
Target:  5'- --aAGUCACAGGGCgaGCGCUC-CaGCa -3'
miRNA:   3'- ucaUCAGUGUCUCGggCGCGAGuG-CG- -5'
11435 5' -56.4 NC_003085.1 + 43910 0.66 0.623565
Target:  5'- ---cGUCGCGGcgccaGGCCCuuuGCGCgcacuUCGCGCa -3'
miRNA:   3'- ucauCAGUGUC-----UCGGG---CGCG-----AGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 44184 0.66 0.601524
Target:  5'- ---cGUCuucuucGCCCGUGCUCGCGUa -3'
miRNA:   3'- ucauCAGugucu-CGGGCGCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 45699 0.76 0.161943
Target:  5'- --gAGUCACGGAGCaCUGCGUagACGCc -3'
miRNA:   3'- ucaUCAGUGUCUCG-GGCGCGagUGCG- -5'
11435 5' -56.4 NC_003085.1 + 46026 0.68 0.463632
Target:  5'- aGGgcauGUCAguGGGCuCUGCGCauccgCGCGCg -3'
miRNA:   3'- -UCau--CAGUguCUCG-GGCGCGa----GUGCG- -5'
11435 5' -56.4 NC_003085.1 + 46839 0.77 0.129745
Target:  5'- gGGUAG-CugGGAGCCaGCGCUC-CGCu -3'
miRNA:   3'- -UCAUCaGugUCUCGGgCGCGAGuGCG- -5'
11435 5' -56.4 NC_003085.1 + 48133 0.67 0.536301
Target:  5'- cAGcAGUCugGGcugccuccuccAGCgcggcgUCGCGCUCACGCu -3'
miRNA:   3'- -UCaUCAGugUC-----------UCG------GGCGCGAGUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.