miRNA display CGI


Results 1 - 20 of 35 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11435 5' -56.4 NC_003085.1 + 24911 0.67 0.56868
Target:  5'- --aGGUCAgGcauGUCCGCGC-CGCGCa -3'
miRNA:   3'- ucaUCAGUgUcu-CGGGCGCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 11172 0.77 0.14503
Target:  5'- ---cGUCACAGgcaaAGCCCGaGCUCGCGCc -3'
miRNA:   3'- ucauCAGUGUC----UCGGGCgCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 7064 0.77 0.133049
Target:  5'- ---cGUCAUGGAcgaggaggacaagGCCCGCGCUCAUGCc -3'
miRNA:   3'- ucauCAGUGUCU-------------CGGGCGCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 36341 1.12 0.000388
Target:  5'- cAGUAGUCACAGAGCCCGCGCUCACGCa -3'
miRNA:   3'- -UCAUCAGUGUCUCGGGCGCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 28945 0.66 0.623565
Target:  5'- cGUcaugCGCGGAG-UCGCGCUCGuCGCg -3'
miRNA:   3'- uCAuca-GUGUCUCgGGCGCGAGU-GCG- -5'
11435 5' -56.4 NC_003085.1 + 43910 0.66 0.623565
Target:  5'- ---cGUCGCGGcgccaGGCCCuuuGCGCgcacuUCGCGCa -3'
miRNA:   3'- ucauCAGUGUC-----UCGGG---CGCG-----AGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 34836 0.66 0.612536
Target:  5'- uGGgcGUCACAcAGCCCaugaGCUUcgACGCg -3'
miRNA:   3'- -UCauCAGUGUcUCGGGcg--CGAG--UGCG- -5'
11435 5' -56.4 NC_003085.1 + 44184 0.66 0.601524
Target:  5'- ---cGUCuucuucGCCCGUGCUCGCGUa -3'
miRNA:   3'- ucauCAGugucu-CGGGCGCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 27850 0.66 0.601524
Target:  5'- cGUcucgCGCGGGucGCUCGCGC-CACGCa -3'
miRNA:   3'- uCAuca-GUGUCU--CGGGCGCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 27908 0.73 0.254891
Target:  5'- aGGgcGUC-CAcGAGCUCGCGCcgguagUCACGCa -3'
miRNA:   3'- -UCauCAGuGU-CUCGGGCGCG------AGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 32892 0.73 0.268327
Target:  5'- gGGUcGUCGCAGuGGCCgGgCGC-CACGCa -3'
miRNA:   3'- -UCAuCAGUGUC-UCGGgC-GCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 20754 0.67 0.525648
Target:  5'- --aAG-CGCAGGGCCaGCGCgcagcucCGCGCg -3'
miRNA:   3'- ucaUCaGUGUCUCGGgCGCGa------GUGCG- -5'
11435 5' -56.4 NC_003085.1 + 16171 0.75 0.201163
Target:  5'- uGUGGUCGauugcCAGGGCCCucugacagguaCGCUCGCGCg -3'
miRNA:   3'- uCAUCAGU-----GUCUCGGGc----------GCGAGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 30519 0.68 0.515074
Target:  5'- ---cGUCgGCGGGGCCCuguaggcgaugGCGCUCAUGg -3'
miRNA:   3'- ucauCAG-UGUCUCGGG-----------CGCGAGUGCg -5'
11435 5' -56.4 NC_003085.1 + 43827 0.72 0.282328
Target:  5'- --aAGUCACAGGGCgaGCGCUC-CaGCa -3'
miRNA:   3'- ucaUCAGUGUCUCGggCGCGAGuG-CG- -5'
11435 5' -56.4 NC_003085.1 + 31517 0.75 0.185568
Target:  5'- aGGUGGccccaGCAGAGCCCagaGCGC-CGCGCu -3'
miRNA:   3'- -UCAUCag---UGUCUCGGG---CGCGaGUGCG- -5'
11435 5' -56.4 NC_003085.1 + 46839 0.77 0.129745
Target:  5'- gGGUAG-CugGGAGCCaGCGCUC-CGCu -3'
miRNA:   3'- -UCAUCaGugUCUCGGgCGCGAGuGCG- -5'
11435 5' -56.4 NC_003085.1 + 38579 0.7 0.387375
Target:  5'- cGUAGUCGCuGAGCCgcuucaacUGCGUccaGCGCa -3'
miRNA:   3'- uCAUCAGUGuCUCGG--------GCGCGag-UGCG- -5'
11435 5' -56.4 NC_003085.1 + 12019 0.71 0.344096
Target:  5'- cGGUGGcgggCGCGGGGUUgGCGCUCGCu- -3'
miRNA:   3'- -UCAUCa---GUGUCUCGGgCGCGAGUGcg -5'
11435 5' -56.4 NC_003085.1 + 37917 0.66 0.601524
Target:  5'- -uUGG-CGCAG-GCCCcgGCGCUCgacgaACGCg -3'
miRNA:   3'- ucAUCaGUGUCuCGGG--CGCGAG-----UGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.