Results 21 - 35 of 35 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11435 | 5' | -56.4 | NC_003085.1 | + | 9812 | 0.7 | 0.387375 |
Target: 5'- gAGUGGuUCAggcCAGAGCCCGaguugcuguCGUUCAuCGCg -3' miRNA: 3'- -UCAUC-AGU---GUCUCGGGC---------GCGAGU-GCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 8607 | 0.7 | 0.377551 |
Target: 5'- cGUGGUgACGGAGaaggaauCCCGCGUcCugGCc -3' miRNA: 3'- uCAUCAgUGUCUC-------GGGCGCGaGugCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 12019 | 0.71 | 0.344096 |
Target: 5'- cGGUGGcgggCGCGGGGUUgGCGCUCGCu- -3' miRNA: 3'- -UCAUCa---GUGUCUCGGgCGCGAGUGcg -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 43827 | 0.72 | 0.282328 |
Target: 5'- --aAGUCACAGGGCgaGCGCUC-CaGCa -3' miRNA: 3'- ucaUCAGUGUCUCGggCGCGAGuG-CG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 27006 | 0.72 | 0.275256 |
Target: 5'- gAGUGGUgCACGG-GCCuuggugugccugCGCGCUCgACGCu -3' miRNA: 3'- -UCAUCA-GUGUCuCGG------------GCGCGAG-UGCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 32892 | 0.73 | 0.268327 |
Target: 5'- gGGUcGUCGCAGuGGCCgGgCGC-CACGCa -3' miRNA: 3'- -UCAuCAGUGUC-UCGGgC-GCGaGUGCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 27908 | 0.73 | 0.254891 |
Target: 5'- aGGgcGUC-CAcGAGCUCGCGCcgguagUCACGCa -3' miRNA: 3'- -UCauCAGuGU-CUCGGGCGCG------AGUGCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 16171 | 0.75 | 0.201163 |
Target: 5'- uGUGGUCGauugcCAGGGCCCucugacagguaCGCUCGCGCg -3' miRNA: 3'- uCAUCAGU-----GUCUCGGGc----------GCGAGUGCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 24537 | 0.75 | 0.185568 |
Target: 5'- uGUGGUCGCGGuGCgUGCGCg-GCGCg -3' miRNA: 3'- uCAUCAGUGUCuCGgGCGCGagUGCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 31517 | 0.75 | 0.185568 |
Target: 5'- aGGUGGccccaGCAGAGCCCagaGCGC-CGCGCu -3' miRNA: 3'- -UCAUCag---UGUCUCGGG---CGCGaGUGCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 45699 | 0.76 | 0.161943 |
Target: 5'- --gAGUCACGGAGCaCUGCGUagACGCc -3' miRNA: 3'- ucaUCAGUGUCUCG-GGCGCGagUGCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 11172 | 0.77 | 0.14503 |
Target: 5'- ---cGUCACAGgcaaAGCCCGaGCUCGCGCc -3' miRNA: 3'- ucauCAGUGUC----UCGGGCgCGAGUGCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 7064 | 0.77 | 0.133049 |
Target: 5'- ---cGUCAUGGAcgaggaggacaagGCCCGCGCUCAUGCc -3' miRNA: 3'- ucauCAGUGUCU-------------CGGGCGCGAGUGCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 46839 | 0.77 | 0.129745 |
Target: 5'- gGGUAG-CugGGAGCCaGCGCUC-CGCu -3' miRNA: 3'- -UCAUCaGugUCUCGGgCGCGAGuGCG- -5' |
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11435 | 5' | -56.4 | NC_003085.1 | + | 36341 | 1.12 | 0.000388 |
Target: 5'- cAGUAGUCACAGAGCCCGCGCUCACGCa -3' miRNA: 3'- -UCAUCAGUGUCUCGGGCGCGAGUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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