Results 1 - 20 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 49139 | 0.69 | 0.398102 |
Target: 5'- --cGUCCUCGUccucuccGAGCAUCUCCAugAGGu -3' miRNA: 3'- gguCGGGAGCGc------CUCGUAGAGGU--UCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 48156 | 0.7 | 0.389141 |
Target: 5'- gCCAGCCUUCGCGGccacGCGggagaaCUCCGGc- -3' miRNA: 3'- -GGUCGGGAGCGCCu---CGUa-----GAGGUUcc -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 47818 | 0.71 | 0.339029 |
Target: 5'- gCCAGCCCagacgUUGCGGuugugccagucguccGCGUCaUCCGGGGu -3' miRNA: 3'- -GGUCGGG-----AGCGCCu--------------CGUAG-AGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 46432 | 0.7 | 0.354643 |
Target: 5'- aCAGCCUUCGCGugcaccgucuGGGCGUCgUCCGugcgcccagcGGGg -3' miRNA: 3'- gGUCGGGAGCGC----------CUCGUAG-AGGU----------UCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 46235 | 0.69 | 0.407195 |
Target: 5'- gCCGGCCCagguagCGcCGGcaucgccuugcGGCAUCgggCCAGGGc -3' miRNA: 3'- -GGUCGGGa-----GC-GCC-----------UCGUAGa--GGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 45843 | 0.71 | 0.30706 |
Target: 5'- gCCAGCCagUCGCGGcGCAcgUCCAGGcGg -3' miRNA: 3'- -GGUCGGg-AGCGCCuCGUagAGGUUC-C- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 45297 | 0.68 | 0.45454 |
Target: 5'- uCCGGuCCUUCGuCGGAgGCGUgguUUUCAAGGg -3' miRNA: 3'- -GGUC-GGGAGC-GCCU-CGUA---GAGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 44155 | 0.76 | 0.152278 |
Target: 5'- gCCAcGCgCUCGCGGAGgGaggcgacuucggUCUCCAGGGc -3' miRNA: 3'- -GGU-CGgGAGCGCCUCgU------------AGAGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 43050 | 0.66 | 0.612058 |
Target: 5'- gCGGCCCgcuggggaacggcugCGUGGAGaCAcggCCGAGGa -3' miRNA: 3'- gGUCGGGa--------------GCGCCUC-GUagaGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 42867 | 0.72 | 0.292322 |
Target: 5'- cCCGGCCCggcCG-GGGGCGUgUCgAGGGu -3' miRNA: 3'- -GGUCGGGa--GCgCCUCGUAgAGgUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 42095 | 0.66 | 0.567805 |
Target: 5'- gUCGG-CCUCGUacuGGAGCGgcgC-CCAGGGg -3' miRNA: 3'- -GGUCgGGAGCG---CCUCGUa--GaGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 40664 | 0.7 | 0.380313 |
Target: 5'- gCCGcGCaaCCUCGCGGAGCcgCcggCgCAGGGg -3' miRNA: 3'- -GGU-CG--GGAGCGCCUCGuaGa--G-GUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 38761 | 0.68 | 0.474297 |
Target: 5'- gCCAGUgCCUCGCGG-GCcgCgCgCAGGGc -3' miRNA: 3'- -GGUCG-GGAGCGCCuCGuaGaG-GUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 38383 | 0.66 | 0.610973 |
Target: 5'- gCAGaCuCCUgGCGGuGCAgg-CCGAGGu -3' miRNA: 3'- gGUC-G-GGAgCGCCuCGUagaGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 36908 | 0.68 | 0.50471 |
Target: 5'- cCCAGCCCggccagcggCGCGGguGGCAUC-CCu--- -3' miRNA: 3'- -GGUCGGGa--------GCGCC--UCGUAGaGGuucc -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 35942 | 0.69 | 0.43906 |
Target: 5'- gUAGCgCUUGCGGAGCuucucgacGuucgccgcugccacgUCUCCGAGGu -3' miRNA: 3'- gGUCGgGAGCGCCUCG--------U---------------AGAGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 35042 | 1.11 | 0.000449 |
Target: 5'- gCCAGCCCUCGCGGAGCAUCUCCAAGGc -3' miRNA: 3'- -GGUCGGGAGCGCCUCGUAGAGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 33263 | 0.68 | 0.474297 |
Target: 5'- uUCAGUCCUCGCGcgcGAGCGUaccugUCaGAGGg -3' miRNA: 3'- -GGUCGGGAGCGC---CUCGUAg----AGgUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 30330 | 0.66 | 0.610973 |
Target: 5'- gCgGGCCCUgGCGGAcGC-UgUCgCGGGGc -3' miRNA: 3'- -GgUCGGGAgCGCCU-CGuAgAG-GUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 30083 | 0.68 | 0.474297 |
Target: 5'- aCCGGCCCaCGCGGcugcacAGCAcg-UCGAGGa -3' miRNA: 3'- -GGUCGGGaGCGCC------UCGUagaGGUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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