miRNA display CGI


Results 1 - 20 of 49 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
11436 5' -57.2 NC_003085.1 + 8213 0.66 0.621831
Target:  5'- uCCAGCCUgccgCGCGuGGCGUUguaGAGGc -3'
miRNA:   3'- -GGUCGGGa---GCGCcUCGUAGaggUUCC- -5'
11436 5' -57.2 NC_003085.1 + 46235 0.69 0.407195
Target:  5'- gCCGGCCCagguagCGcCGGcaucgccuugcGGCAUCgggCCAGGGc -3'
miRNA:   3'- -GGUCGGGa-----GC-GCC-----------UCGUAGa--GGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 48156 0.7 0.389141
Target:  5'- gCCAGCCUUCGCGGccacGCGggagaaCUCCGGc- -3'
miRNA:   3'- -GGUCGGGAGCGCCu---CGUa-----GAGGUUcc -5'
11436 5' -57.2 NC_003085.1 + 35042 1.11 0.000449
Target:  5'- gCCAGCCCUCGCGGAGCAUCUCCAAGGc -3'
miRNA:   3'- -GGUCGGGAGCGCCUCGUAGAGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 534 0.66 0.589319
Target:  5'- gCuGCCCUCGCGGAGauuggCgaacggCgCGAGGc -3'
miRNA:   3'- gGuCGGGAGCGCCUCgua--Ga-----G-GUUCC- -5'
11436 5' -57.2 NC_003085.1 + 29059 0.66 0.57854
Target:  5'- cCCAGCCCU---GGGGCGUgUCCGcgaagucuguGGGc -3'
miRNA:   3'- -GGUCGGGAgcgCCUCGUAgAGGU----------UCC- -5'
11436 5' -57.2 NC_003085.1 + 4777 0.66 0.567805
Target:  5'- uUCGGCUCUCG-GGugcuGGCAUCcgCCAGGa -3'
miRNA:   3'- -GGUCGGGAGCgCC----UCGUAGa-GGUUCc -5'
11436 5' -57.2 NC_003085.1 + 6909 0.67 0.535934
Target:  5'- gUCAGCCCUCGCcc-GCGcgCUggCCGAGGc -3'
miRNA:   3'- -GGUCGGGAGCGccuCGUa-GA--GGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 30083 0.68 0.474297
Target:  5'- aCCGGCCCaCGCGGcugcacAGCAcg-UCGAGGa -3'
miRNA:   3'- -GGUCGGGaGCGCC------UCGUagaGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 21018 0.69 0.416417
Target:  5'- uCCAcGCCCUgGCGGcGGUAUgUCCAGc- -3'
miRNA:   3'- -GGU-CGGGAgCGCC-UCGUAgAGGUUcc -5'
11436 5' -57.2 NC_003085.1 + 17481 0.68 0.464364
Target:  5'- gCCAGCCCcaggCGUaacgGGGGCAgUCgccagcccgCCGAGGa -3'
miRNA:   3'- -GGUCGGGa---GCG----CCUCGU-AGa--------GGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 36908 0.68 0.50471
Target:  5'- cCCAGCCCggccagcggCGCGGguGGCAUC-CCu--- -3'
miRNA:   3'- -GGUCGGGa--------GCGCC--UCGUAGaGGuucc -5'
11436 5' -57.2 NC_003085.1 + 38383 0.66 0.610973
Target:  5'- gCAGaCuCCUgGCGGuGCAgg-CCGAGGu -3'
miRNA:   3'- gGUC-G-GGAgCGCCuCGUagaGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 35942 0.69 0.43906
Target:  5'- gUAGCgCUUGCGGAGCuucucgacGuucgccgcugccacgUCUCCGAGGu -3'
miRNA:   3'- gGUCGgGAGCGCCUCG--------U---------------AGAGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 17853 0.66 0.610973
Target:  5'- -aGGCCC-CGCGGccGGUGcCUCCuGGGg -3'
miRNA:   3'- ggUCGGGaGCGCC--UCGUaGAGGuUCC- -5'
11436 5' -57.2 NC_003085.1 + 29288 0.67 0.525445
Target:  5'- aCCGGCUCUCG-GGAGUacGUCUgCAAc- -3'
miRNA:   3'- -GGUCGGGAGCgCCUCG--UAGAgGUUcc -5'
11436 5' -57.2 NC_003085.1 + 23479 0.69 0.435237
Target:  5'- uCgAGCUCcgCGCGGAGUugCUCgGAGGg -3'
miRNA:   3'- -GgUCGGGa-GCGCCUCGuaGAGgUUCC- -5'
11436 5' -57.2 NC_003085.1 + 24218 0.7 0.389141
Target:  5'- --cGCCCgcCGCGGAGCG-CaCCAGGGc -3'
miRNA:   3'- gguCGGGa-GCGCCUCGUaGaGGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 19127 0.66 0.589319
Target:  5'- --cGCCC-CGCGacAGCGUCcgCCAGGGc -3'
miRNA:   3'- gguCGGGaGCGCc-UCGUAGa-GGUUCC- -5'
11436 5' -57.2 NC_003085.1 + 42095 0.66 0.567805
Target:  5'- gUCGG-CCUCGUacuGGAGCGgcgC-CCAGGGg -3'
miRNA:   3'- -GGUCgGGAGCG---CCUCGUa--GaGGUUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.