Results 41 - 49 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 46432 | 0.7 | 0.354643 |
Target: 5'- aCAGCCUUCGCGugcaccgucuGGGCGUCgUCCGugcgcccagcGGGg -3' miRNA: 3'- gGUCGGGAGCGC----------CUCGUAG-AGGU----------UCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 19434 | 0.7 | 0.354643 |
Target: 5'- gCUGGCCCUggaagcCGCGGAcGaCGUCgCCAAGGc -3' miRNA: 3'- -GGUCGGGA------GCGCCU-C-GUAGaGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 47818 | 0.71 | 0.339029 |
Target: 5'- gCCAGCCCagacgUUGCGGuugugccagucguccGCGUCaUCCGGGGu -3' miRNA: 3'- -GGUCGGG-----AGCGCCu--------------CGUAG-AGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 45843 | 0.71 | 0.30706 |
Target: 5'- gCCAGCCagUCGCGGcGCAcgUCCAGGcGg -3' miRNA: 3'- -GGUCGGg-AGCGCCuCGUagAGGUUC-C- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 42867 | 0.72 | 0.292322 |
Target: 5'- cCCGGCCCggcCG-GGGGCGUgUCgAGGGu -3' miRNA: 3'- -GGUCGGGa--GCgCCUCGUAgAGgUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 26140 | 0.74 | 0.209822 |
Target: 5'- gCCGGCCagaGCGGcgucaAGCAUCUCCAGcGGc -3' miRNA: 3'- -GGUCGGgagCGCC-----UCGUAGAGGUU-CC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 44155 | 0.76 | 0.152278 |
Target: 5'- gCCAcGCgCUCGCGGAGgGaggcgacuucggUCUCCAGGGc -3' miRNA: 3'- -GGU-CGgGAGCGCCUCgU------------AGAGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 13464 | 0.81 | 0.067732 |
Target: 5'- gCCaAGCUgUCGCGGAGCGUUUCCuGGGc -3' miRNA: 3'- -GG-UCGGgAGCGCCUCGUAGAGGuUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 35042 | 1.11 | 0.000449 |
Target: 5'- gCCAGCCCUCGCGGAGCAUCUCCAAGGc -3' miRNA: 3'- -GGUCGGGAGCGCCUCGUAGAGGUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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