Results 21 - 40 of 49 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
11436 | 5' | -57.2 | NC_003085.1 | + | 7320 | 0.68 | 0.484336 |
Target: 5'- aCGGCCaUCGCGGAgGCGg--CUGAGGa -3' miRNA: 3'- gGUCGGgAGCGCCU-CGUagaGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 25925 | 0.68 | 0.483327 |
Target: 5'- gCguGCCCUCGUGGAgaaggcgaagacuGCGUgaagCgugCCGAGGg -3' miRNA: 3'- -GguCGGGAGCGCCU-------------CGUA----Ga--GGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 38761 | 0.68 | 0.474297 |
Target: 5'- gCCAGUgCCUCGCGG-GCcgCgCgCAGGGc -3' miRNA: 3'- -GGUCG-GGAGCGCCuCGuaGaG-GUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 30083 | 0.68 | 0.474297 |
Target: 5'- aCCGGCCCaCGCGGcugcacAGCAcg-UCGAGGa -3' miRNA: 3'- -GGUCGGGaGCGCC------UCGUagaGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 33263 | 0.68 | 0.474297 |
Target: 5'- uUCAGUCCUCGCGcgcGAGCGUaccugUCaGAGGg -3' miRNA: 3'- -GGUCGGGAGCGC---CUCGUAg----AGgUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 7424 | 0.68 | 0.473299 |
Target: 5'- -gGGCCCUCcCGGGaagacgcGCGUCUCCAu-- -3' miRNA: 3'- ggUCGGGAGcGCCU-------CGUAGAGGUucc -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 24806 | 0.68 | 0.473299 |
Target: 5'- cUCAGCCCgUCGCGGcGCGcggCUuucaaccaggacgCCGAGGc -3' miRNA: 3'- -GGUCGGG-AGCGCCuCGUa--GA-------------GGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 27910 | 0.68 | 0.464364 |
Target: 5'- -uGGCCCUCGCGGGccgcGCGUggUUCCGGuaccGGa -3' miRNA: 3'- ggUCGGGAGCGCCU----CGUA--GAGGUU----CC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 17481 | 0.68 | 0.464364 |
Target: 5'- gCCAGCCCcaggCGUaacgGGGGCAgUCgccagcccgCCGAGGa -3' miRNA: 3'- -GGUCGGGa---GCG----CCUCGU-AGa--------GGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 45297 | 0.68 | 0.45454 |
Target: 5'- uCCGGuCCUUCGuCGGAgGCGUgguUUUCAAGGg -3' miRNA: 3'- -GGUC-GGGAGC-GCCU-CGUA---GAGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 35942 | 0.69 | 0.43906 |
Target: 5'- gUAGCgCUUGCGGAGCuucucgacGuucgccgcugccacgUCUCCGAGGu -3' miRNA: 3'- gGUCGgGAGCGCCUCG--------U---------------AGAGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 23479 | 0.69 | 0.435237 |
Target: 5'- uCgAGCUCcgCGCGGAGUugCUCgGAGGg -3' miRNA: 3'- -GgUCGGGa-GCGCCUCGuaGAGgUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 11639 | 0.69 | 0.425765 |
Target: 5'- aCCAGCgCgCGCGGAggGCAUUgcgccggguggCCGAGGa -3' miRNA: 3'- -GGUCGgGaGCGCCU--CGUAGa----------GGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 21018 | 0.69 | 0.416417 |
Target: 5'- uCCAcGCCCUgGCGGcGGUAUgUCCAGc- -3' miRNA: 3'- -GGU-CGGGAgCGCC-UCGUAgAGGUUcc -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 46235 | 0.69 | 0.407195 |
Target: 5'- gCCGGCCCagguagCGcCGGcaucgccuugcGGCAUCgggCCAGGGc -3' miRNA: 3'- -GGUCGGGa-----GC-GCC-----------UCGUAGa--GGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 49139 | 0.69 | 0.398102 |
Target: 5'- --cGUCCUCGUccucuccGAGCAUCUCCAugAGGu -3' miRNA: 3'- gguCGGGAGCGc------CUCGUAGAGGU--UCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 48156 | 0.7 | 0.389141 |
Target: 5'- gCCAGCCUUCGCGGccacGCGggagaaCUCCGGc- -3' miRNA: 3'- -GGUCGGGAGCGCCu---CGUa-----GAGGUUcc -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 24218 | 0.7 | 0.389141 |
Target: 5'- --cGCCCgcCGCGGAGCG-CaCCAGGGc -3' miRNA: 3'- gguCGGGa-GCGCCUCGUaGaGGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 29416 | 0.7 | 0.380313 |
Target: 5'- gCCAGCCCaUgGCGGAGgcuCAggcgCUgCAAGGc -3' miRNA: 3'- -GGUCGGG-AgCGCCUC---GUa---GAgGUUCC- -5' |
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11436 | 5' | -57.2 | NC_003085.1 | + | 40664 | 0.7 | 0.380313 |
Target: 5'- gCCGcGCaaCCUCGCGGAGCcgCcggCgCAGGGg -3' miRNA: 3'- -GGU-CG--GGAGCGCCUCGuaGa--G-GUUCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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